STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEF93577.1KEGG: adg:Adeg_0298 germination protein, Ger(X)C family; TIGRFAM: Spore germination GerAC; PFAM: Spore germination GerAC. (382 aa)    
Predicted Functional Partners:
AEF93575.1
KEGG: adg:Adeg_0296 spore germination protein; TIGRFAM: Spore germination GerAB; PFAM: Spore germination GerAB.
  
 0.902
AEF93576.1
PFAM: Bacillus/Clostridium GerA spore germination protein; KEGG: dae:Dtox_0585 GerA spore germination protein.
 
  
 0.898
AEF93581.1
KEGG: tte:TTE2380 germination protein; TIGRFAM: Spore germination GerAB; PFAM: Spore germination GerAB.
  
 0.860
AEF93579.1
PFAM: Bacillus/Clostridium GerA spore germination protein; KEGG: tjr:TherJR_2525 GerA spore germination protein.
 
  
 0.831
AEF94184.1
PFAM: Bacillus/Clostridium GerA spore germination protein; KEGG: drm:Dred_1732 GerA spore germination protein.
 
  
 0.721
AEF94185.1
KEGG: drm:Dred_1733 spore germination protein; TIGRFAM: Spore germination GerAB; PFAM: Spore germination GerAB.
 
  
 0.699
AEF94872.1
Sporulation protein YtfJ; KEGG: drm:Dred_1138 hypothetical protein; TIGRFAM: Sporulation protein YtfJ; PFAM: Sporulation protein YtfJ.
  
     0.672
AEF93578.1
KEGG: adg:Adeg_0299 hypothetical protein.
       0.645
AEF95492.1
TIGRFAM: Spore germination YpeB; KEGG: drm:Dred_3194 peptidase.
 
     0.620
AEF93702.1
PFAM: Cell wall hydrolase, SleB; KEGG: drm:Dred_1335 cell wall hydrolase, SleB.
  
    0.552
Your Current Organism:
Desulfotomaculum nigrificans
NCBI taxonomy Id: 868595
Other names: D. nigrificans CO-1-SRB, Desulfotomaculum carboxydivorans CO-1-SRB, Desulfotomaculum carboxydivorans DSM 14880, Desulfotomaculum nigrificans CO-1-SRB
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