STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEF93607.1KEGG: drm:Dred_2533 signal transduction histidine kinase regulating citrate/malate metabolism. (187 aa)    
Predicted Functional Partners:
AEF95475.1
KEGG: drm:Dred_3178 response regulator receiver protein; PFAM: Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain.
    
 0.981
obg
GTPase obg; An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family.
  
  
 0.918
AEF94930.1
Sporulation transcriptional activator Spo0A; May play the central regulatory role in sporulation. It may be an element of the effector pathway responsible for the activation of sporulation genes in response to nutritional stress. Spo0A may act in concert with spo0H (a sigma factor) to control the expression of some genes that are critical to the sporulation process.
     
 0.916
AEF93351.1
KEGG: drm:Dred_2891 response regulator receiver protein; PFAM: Signal transduction response regulator, receiver domain; SMART: Signal transduction response regulator, receiver domain.
     
  0.900
AEF95548.1
PFAM: Colicin V production, CvpA; KEGG: drm:Dred_3312 hypothetical protein.
  
     0.710
AEF94198.1
KEGG: drm:Dred_1746 hypothetical protein.
  
     0.687
AEF94293.1
KEGG: drm:Dred_1905 hypothetical protein.
  
     0.685
AEF94641.1
TIGRFAM: Flagellar export FliJ; KEGG: drm:Dred_2404 flagellar export protein FliJ.
  
     0.681
AEF94634.1
KEGG: drm:Dred_2397 hypothetical protein; TIGRFAM: Flagellar biosynthesis protein, FliO; PFAM: Flagellar biosynthesis protein, FliO.
  
     0.656
AEF94824.1
KEGG: drm:Dred_1175 hypothetical protein.
  
     0.656
Your Current Organism:
Desulfotomaculum nigrificans
NCBI taxonomy Id: 868595
Other names: D. nigrificans CO-1-SRB, Desulfotomaculum carboxydivorans CO-1-SRB, Desulfotomaculum carboxydivorans DSM 14880, Desulfotomaculum nigrificans CO-1-SRB
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.