STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEF93835.1KEGG: drm:Dred_1464 stage V sporulation protein AD; TIGRFAM: Stage V sporulation AD; PFAM: Stage V sporulation AD. (335 aa)    
Predicted Functional Partners:
AEF93836.1
KEGG: drm:Dred_1465 SpoVA protein; TIGRFAM: Sporulation stage V, protein AC; PFAM: SpoVA.
 
  
 0.993
AEF93834.1
KEGG: drm:Dred_1463 SpoVA protein; TIGRFAM: Sporulation stage V, protein AE; PFAM: SpoVA.
 
  
 0.982
AEF93837.1
PFAM: Protein of unknown function DUF421; Protein of unknown function DUF1657; KEGG: drm:Dred_1466 hypothetical protein.
 
  
 0.948
gpr
Spore protease; Initiates the rapid degradation of small, acid-soluble proteins during spore germination; Belongs to the peptidase A25 family.
  
  
 0.930
AEF94902.1
PFAM: Bacillus/Clostridium GerA spore germination protein; KEGG: drm:Dred_1110 GerA spore germination protein.
 
  
 0.884
AEF93838.1
PFAM: Protein of unknown function DUF1657; KEGG: drm:Dred_1467 hypothetical protein.
 
     0.853
AEF93005.1
Transcriptional regulator, AbrB family; TIGRFAM: Sporulation stage V, protein T; Transcription regulator AbrB; PFAM: Transcription regulator AbrB/SpoV, predicted; GAF; KEGG: drm:Dred_0113 AbrB family transcriptional regulator; SMART: Transcription regulator AbrB/SpoV, predicted.
  
   
 0.792
AEF94843.1
Stage IV sporulation protein A; ATPase. Has a role at an early stage in the morphogenesis of the spore coat.
  
   
 0.789
AEF93579.1
PFAM: Bacillus/Clostridium GerA spore germination protein; KEGG: tjr:TherJR_2525 GerA spore germination protein.
  
  
 0.787
AEF94184.1
PFAM: Bacillus/Clostridium GerA spore germination protein; KEGG: drm:Dred_1732 GerA spore germination protein.
  
  
 0.782
Your Current Organism:
Desulfotomaculum nigrificans
NCBI taxonomy Id: 868595
Other names: D. nigrificans CO-1-SRB, Desulfotomaculum carboxydivorans CO-1-SRB, Desulfotomaculum carboxydivorans DSM 14880, Desulfotomaculum nigrificans CO-1-SRB
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.