STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEF93840.1PFAM: Protein of unknown function DUF421; KEGG: drm:Dred_1469 hypothetical protein. (226 aa)    
Predicted Functional Partners:
AEF93841.1
KEGG: drm:Dred_1470 hypothetical protein.
 
     0.882
AEF93835.1
KEGG: drm:Dred_1464 stage V sporulation protein AD; TIGRFAM: Stage V sporulation AD; PFAM: Stage V sporulation AD.
 
  
 0.678
AEF93834.1
KEGG: drm:Dred_1463 SpoVA protein; TIGRFAM: Sporulation stage V, protein AE; PFAM: SpoVA.
 
  
 0.668
AEF94872.1
Sporulation protein YtfJ; KEGG: drm:Dred_1138 hypothetical protein; TIGRFAM: Sporulation protein YtfJ; PFAM: Sporulation protein YtfJ.
  
     0.663
AEF93836.1
KEGG: drm:Dred_1465 SpoVA protein; TIGRFAM: Sporulation stage V, protein AC; PFAM: SpoVA.
 
  
 0.657
AEF93580.1
KEGG: aar:Acear_1546 germination protein, Ger(X)C family; TIGRFAM: Spore germination GerAC; PFAM: Spore germination GerAC.
 
  
 0.643
AEF95360.1
KEGG: aar:Acear_2081 germination protein, Ger(X)C family; TIGRFAM: Spore germination GerAC; PFAM: Spore germination GerAC.
 
  
 0.636
AEF93579.1
PFAM: Bacillus/Clostridium GerA spore germination protein; KEGG: tjr:TherJR_2525 GerA spore germination protein.
 
   
 0.596
AEF94184.1
PFAM: Bacillus/Clostridium GerA spore germination protein; KEGG: drm:Dred_1732 GerA spore germination protein.
 
   
 0.592
AEF94843.1
Stage IV sporulation protein A; ATPase. Has a role at an early stage in the morphogenesis of the spore coat.
  
     0.533
Your Current Organism:
Desulfotomaculum nigrificans
NCBI taxonomy Id: 868595
Other names: D. nigrificans CO-1-SRB, Desulfotomaculum carboxydivorans CO-1-SRB, Desulfotomaculum carboxydivorans DSM 14880, Desulfotomaculum nigrificans CO-1-SRB
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