close STRING v12.5 is now available!
The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEF93879.1KEGG: dae:Dtox_1774 transposase, IS605 OrfB family; TIGRFAM: Transposase, IS605 OrfB, C-terminal; PFAM: Transposase, IS605 OrfB, C-terminal. (478 aa)    
Predicted Functional Partners:
AEF94515.1
PFAM: Domain of unknown function DUF1540; KEGG: dae:Dtox_0890 protein of unknown function DUF1540.
  
     0.544
AEF94669.1
KEGG: dae:Dtox_0663 hypothetical protein.
  
     0.487
AEF94571.1
KEGG: dae:Dtox_2816 hypothetical protein.
  
     0.481
AEF94342.1
KEGG: tjr:TherJR_1383 hypothetical protein.
  
     0.480
AEF93577.1
KEGG: adg:Adeg_0298 germination protein, Ger(X)C family; TIGRFAM: Spore germination GerAC; PFAM: Spore germination GerAC.
  
     0.470
AEF93068.1
KEGG: dae:Dtox_2781 resolvase domain protein; PFAM: Resolvase, N-terminal; HTH transcriptional regulator, MerR; SMART: Resolvase, N-terminal.
  
    0.463
AEF94663.1
KEGG: dae:Dtox_2781 resolvase domain protein; PFAM: Resolvase, N-terminal; HTH transcriptional regulator, MerR; SMART: Resolvase, N-terminal.
  
    0.463
AEF94407.1
KEGG: drm:Dred_2170 hypothetical protein.
  
     0.456
AEF94573.1
PFAM: Protein of unknown function DUF1836; KEGG: dae:Dtox_0574 hypothetical protein.
  
     0.443
AEF95239.1
KEGG: dae:Dtox_1585 hypothetical protein.
  
     0.437
Your Current Organism:
Desulfotomaculum nigrificans
NCBI taxonomy Id: 868595
Other names: D. nigrificans CO-1-SRB, Desulfotomaculum carboxydivorans CO-1-SRB, Desulfotomaculum carboxydivorans DSM 14880, Desulfotomaculum nigrificans CO-1-SRB
Server load: high (92%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.