Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AEF94762.1KEGG: cth:Cthe_1015 hypothetical protein. (141 aa)    
Predicted Functional Partners:
AEF94761.1
PFAM: RNA-binding protein, predicted; KEGG: cce:Ccel_1186 hypothetical protein.
 
     0.949
AEF95363.1
PFAM: RNA-binding protein, predicted; KEGG: toc:Toce_0582 RNA-binding protein, predicted.
 
     0.784
AEF94764.1
KEGG: gmc:GY4MC1_2234 cobalt ABC transporter, inner membrane subunit CbiQ; TIGRFAM: Cobalt ABC transporter CbiQ, permease subunit; PFAM: Cobalt transport protein.
       0.539
AEF94763.1
Phosphonate-transporting ATPase; PFAM: ABC transporter-like; KEGG: cth:Cthe_1801 ABC transporter related protein; SMART: ATPase, AAA+ type, core.
       0.496
AEF94765.1
PFAM: Cobalamin (vitamin B12) biosynthesis CbiM; KEGG: gmc:GY4MC1_2233 cobalamin (vitamin B12) biosynthesis CbiM protein.
       0.451
AEF93665.1
PFAM: 4Fe-4S binding domain; KEGG: pth:PTH_2121 hypothetical protein.
  
     0.413
AEF95066.1
PFAM: NADP-dependent oxidoreductase domain; 4Fe-4S binding domain; KEGG: drm:Dred_0774 aldo/keto reductase.
  
     0.400
Your Current Organism:
Desulfotomaculum nigrificans
NCBI taxonomy Id: 868595
Other names: D. nigrificans CO-1-SRB, Desulfotomaculum carboxydivorans CO-1-SRB, Desulfotomaculum carboxydivorans DSM 14880, Desulfotomaculum nigrificans CO-1-SRB
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