Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEF94824.1KEGG: drm:Dred_1175 hypothetical protein. (238 aa)    
Predicted Functional Partners:
AEF94384.1
KEGG: drm:Dred_2147 hypothetical protein.
  
    0.739
AEF93773.1
KEGG: drm:Dred_1407 hypothetical protein.
 
     0.719
AEF95402.1
KEGG: drm:Dred_3106 hypothetical protein.
 
     0.707
AEF94292.1
KEGG: drm:Dred_1904 hypothetical protein.
  
     0.678
AEF95476.1
KEGG: drm:Dred_3179 hypothetical protein.
  
     0.663
AEF93607.1
KEGG: drm:Dred_2533 signal transduction histidine kinase regulating citrate/malate metabolism.
  
     0.656
AEF94407.1
KEGG: drm:Dred_2170 hypothetical protein.
  
     0.648
AEF95129.1
KEGG: drm:Dred_0711 hypothetical protein.
  
    0.633
AEF95471.1
PFAM: Protein of unknown function DUF2062; KEGG: pth:PTH_2836 hypothetical protein.
  
     0.623
ftsL
Septum formation initiator; Essential cell division protein; Belongs to the FtsL family.
  
     0.619
Your Current Organism:
Desulfotomaculum nigrificans
NCBI taxonomy Id: 868595
Other names: D. nigrificans CO-1-SRB, Desulfotomaculum carboxydivorans CO-1-SRB, Desulfotomaculum carboxydivorans DSM 14880, Desulfotomaculum nigrificans CO-1-SRB
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