STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEF94850.1KEGG: drm:Dred_1157 hypothetical protein. (291 aa)    
Predicted Functional Partners:
AEF94849.1
KEGG: drm:Dred_1158 hypothetical protein.
 
     0.946
AEF94852.1
PFAM: Protein of unknown function DUF1614; KEGG: drm:Dred_1155 Fis family transcriptional regulator.
 
     0.749
AEF94851.1
KEGG: drm:Dred_1156 stage II sporulation P family protein; TIGRFAM: Sporulation stage II, protein P; PFAM: Sporulation stage II, protein P.
 
     0.723
AEF94848.1
PFAM: Domain of unknown function DUF512; PDZ/DHR/GLGF; KEGG: drm:Dred_1159 hypothetical protein.
       0.638
AEF93895.1
Sporulation protein YtaF; Probably functions as a manganese efflux pump.
  
     0.598
AEF94082.1
Sporulation protein YunB; KEGG: drm:Dred_1648 hypothetical protein; TIGRFAM: Sporulation protein YunB; PFAM: Sporulation protein YunB, C-terminal.
  
     0.553
der
GTP-binding protein engA; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.
       0.552
AEF93487.1
KEGG: drm:Dred_2696 hypothetical protein.
  
     0.522
AEF93947.1
Sporulation integral membrane protein YlbJ; KEGG: drm:Dred_2080 nucleoside recognition domain-containing protein; TIGRFAM: Sporulation integral membrane protein YlbJ; PFAM: Nucleoside recognition.
  
     0.489
AEF94335.1
Sporulation protein, YlmC/YmxH family; KEGG: drm:Dred_1945 hypothetical protein; TIGRFAM: Sporulation protein YlmC/YmxH; PFAM: PRC-barrel.
  
     0.457
Your Current Organism:
Desulfotomaculum nigrificans
NCBI taxonomy Id: 868595
Other names: D. nigrificans CO-1-SRB, Desulfotomaculum carboxydivorans CO-1-SRB, Desulfotomaculum carboxydivorans DSM 14880, Desulfotomaculum nigrificans CO-1-SRB
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