Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AEF94852.1PFAM: Protein of unknown function DUF1614; KEGG: drm:Dred_1155 Fis family transcriptional regulator. (267 aa)    
Predicted Functional Partners:
AEF94851.1
KEGG: drm:Dred_1156 stage II sporulation P family protein; TIGRFAM: Sporulation stage II, protein P; PFAM: Sporulation stage II, protein P.
     0.977
AEF94850.1
KEGG: drm:Dred_1157 hypothetical protein.
 
     0.739
AEF94312.1
KEGG: drm:Dred_1924 hypothetical protein.
  
     0.696
AEF92988.1
KEGG: drm:Dred_0096 hypothetical protein.
  
     0.687
AEF94849.1
KEGG: drm:Dred_1158 hypothetical protein.
 
     0.687
AEF93071.1
PFAM: Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase; KEGG: drm:Dred_0173 shikimate/quinate 5-dehydrogenase.
  
     0.680
AEF93002.1
KEGG: drm:Dred_0110 hypothetical protein.
  
     0.660
AEF93489.1
KEGG: drm:Dred_2695 hypothetical protein.
  
     0.657
AEF95188.1
KEGG: pth:PTH_1874 hypothetical protein.
  
     0.633
AEF93692.1
KEGG: drm:Dred_1322 small, acid-soluble spore proteins, alpha/be.
  
     0.622
Your Current Organism:
Desulfotomaculum nigrificans
NCBI taxonomy Id: 868595
Other names: D. nigrificans CO-1-SRB, Desulfotomaculum carboxydivorans CO-1-SRB, Desulfotomaculum carboxydivorans DSM 14880, Desulfotomaculum nigrificans CO-1-SRB
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