STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEF94868.1TIGRFAM: Pseudouridine synthase, RsuA/RluB/E/F; PFAM: Pseudouridine synthase, RsuA and RluB/C/D/E/F; RNA-binding S4; KEGG: drm:Dred_1142 pseudouridine synthase; SMART: RNA-binding S4; Belongs to the pseudouridine synthase RsuA family. (238 aa)    
Predicted Functional Partners:
cmk
TIGRFAM: Cytidylate kinase; HAMAP: Cytidylate kinase; KEGG: drm:Dred_1152 cytidylate kinase; PFAM: Cytidylate kinase domain; Shikimate kinase.
  
 0.938
der
GTP-binding protein engA; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.
 
  
 0.847
scpB
Chromosome segregation and condensation protein, ScpB; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves.
 
  
 0.805
AEF94820.1
Exodeoxyribonuclease III; TIGRFAM: AP endonuclease, family 1; Exodeoxyribonuclease III xth; KEGG: dae:Dtox_1749 exodeoxyribonuclease III; PFAM: Endonuclease/exonuclease/phosphatase.
  
    0.801
AEF94869.1
PFAM: Nucleoside recognition; KEGG: drm:Dred_1141 nucleoside recognition domain-containing protein.
       0.749
AEF94867.1
KEGG: drm:Dred_1143 hypothetical protein.
       0.688
AEF94870.1
PFAM: Nucleoside recognition; KEGG: drm:Dred_1140 nucleoside recognition domain-containing protein.
       0.633
AEF94866.1
KEGG: drm:Dred_1144 hypothetical protein.
       0.625
AEF93416.1
KEGG: drm:Dred_2152 small GTP-binding protein; TIGRFAM: Small GTP-binding protein; PFAM: GTP-binding protein, HSR1-related.
  
  
 0.621
AEF94146.1
Sun protein; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA.
  
  
 0.617
Your Current Organism:
Desulfotomaculum nigrificans
NCBI taxonomy Id: 868595
Other names: D. nigrificans CO-1-SRB, Desulfotomaculum carboxydivorans CO-1-SRB, Desulfotomaculum carboxydivorans DSM 14880, Desulfotomaculum nigrificans CO-1-SRB
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