STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEF94954.1Protein of unknown function DUF322; PFAM: Alkaline shock protein Asp23; KEGG: drm:Dred_1066 hypothetical protein. (138 aa)    
Predicted Functional Partners:
AEF94953.1
Protein of unknown function DUF322; PFAM: Alkaline shock protein Asp23; KEGG: drm:Dred_1067 hypothetical protein.
 
     0.798
AEF94956.1
TIGRFAM: Acetyl-CoA biotin carboxyl carrier; KEGG: drm:Dred_1064 pyruvate carboxylase subunit B; PFAM: Carboxylase, conserved domain; Pyruvate carboxyltransferase; Biotin/lipoyl attachment.
  
  
 0.752
AEF94955.1
acetyl-CoA carboxylase, biotin carboxylase; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.
  
    0.732
nusB
NusB antitermination factor; Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons.
  
    0.645
AEF93969.1
UPF0122 protein; Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY/ffh. May be a regulatory protein.
 
     0.623
AEF94952.1
PFAM: Protein of unknown function DUF2273; KEGG: drm:Dred_1068 hypothetical protein.
       0.590
whiA
Sporulation transcription regulator whiA; Involved in cell division and chromosome segregation.
  
     0.539
AEF94957.1
KEGG: drm:Dred_1063 hypothetical protein.
  
    0.508
AEF95067.1
UPF0297 protein; KEGG: drm:Dred_0773 hypothetical protein; HAMAP: Uncharacterised protein family UPF0297; PFAM: Uncharacterised protein family UPF0297; Belongs to the UPF0297 family.
  
    0.500
AEF94960.1
Stage III sporulation protein AE; KEGG: drm:Dred_1060 hypothetical protein; TIGRFAM: Sporulation stage III, protein AE; PFAM: Sporulation stage III, protein AE.
 
    0.496
Your Current Organism:
Desulfotomaculum nigrificans
NCBI taxonomy Id: 868595
Other names: D. nigrificans CO-1-SRB, Desulfotomaculum carboxydivorans CO-1-SRB, Desulfotomaculum carboxydivorans DSM 14880, Desulfotomaculum nigrificans CO-1-SRB
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.