STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEF95006.1KEGG: drm:Dred_2169 hypothetical protein. (182 aa)    
Predicted Functional Partners:
AEF94445.1
KEGG: drm:Dred_2201 hypothetical protein.
  
     0.661
AEF94926.1
KEGG: drm:Dred_1091 hypothetical protein.
  
     0.589
AEF94852.1
PFAM: Protein of unknown function DUF1614; KEGG: drm:Dred_1155 Fis family transcriptional regulator.
 
     0.562
AEF94113.1
KEGG: drm:Dred_1675 hypothetical protein.
  
     0.560
AEF94919.1
KEGG: drm:Dred_1093 hypothetical protein.
  
     0.552
AEF95005.1
PFAM: Heat shock protein Hsp20; KEGG: gtn:GTNG_2082 stress response-like protein HSP; Belongs to the small heat shock protein (HSP20) family.
       0.547
AEF94082.1
Sporulation protein YunB; KEGG: drm:Dred_1648 hypothetical protein; TIGRFAM: Sporulation protein YunB; PFAM: Sporulation protein YunB, C-terminal.
  
     0.542
AEF94929.1
PFAM: Thiamin pyrophosphokinase, catalytic domain; KEGG: drm:Dred_1088 thiamin pyrophosphokinase, catalytic region.
  
     0.531
AEF94914.1
PFAM: Small acid-soluble spore protein, alpha/beta-type; KEGG: drm:Dred_1096 small acid-soluble spore protein, alpha/beta type.
  
     0.510
AEF94851.1
KEGG: drm:Dred_1156 stage II sporulation P family protein; TIGRFAM: Sporulation stage II, protein P; PFAM: Sporulation stage II, protein P.
 
     0.495
Your Current Organism:
Desulfotomaculum nigrificans
NCBI taxonomy Id: 868595
Other names: D. nigrificans CO-1-SRB, Desulfotomaculum carboxydivorans CO-1-SRB, Desulfotomaculum carboxydivorans DSM 14880, Desulfotomaculum nigrificans CO-1-SRB
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.