STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEF95022.1KEGG: dau:Daud_0991 type II secretion system protein E; PFAM: Type II secretion system protein E; General secretory system II, protein E, N-terminal; SMART: ATPase, AAA+ type, core. (568 aa)    
Predicted Functional Partners:
AEF95020.1
PFAM: Type II secretion system F domain; KEGG: mta:Moth_1552 type II secretion system protein.
 
 
 0.998
AEF95010.1
PFAM: Fimbrial assembly; KEGG: cdl:CDR20291_3347 putative membrane protein.
  
 
 0.985
AEF95023.1
Prepilin peptidase; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
 
 0.972
AEF95021.1
Twitching motility protein; TIGRFAM: Pilus retraction protein PilT; PFAM: Type II secretion system protein E; KEGG: adg:Adeg_1724 twitching motility protein; SMART: ATPase, AAA+ type, core.
 
  
0.926
AEF95017.1
KEGG: mta:Moth_1551 N-terminal methylation.
 
 
 0.924
AEF95018.1
Hypothetical protein; KEGG: mta:Moth_1551 N-terminal methylation.
 
 
 0.917
AEF95011.1
TIGRFAM: Type IV pilus assembly protein PilM; KEGG: drm:Dred_1029 type IV pilus assembly protein PilM.
 
 
 0.915
AEF95012.1
KEGG: toc:Toce_1333 hypothetical protein.
  
 
 0.834
AEF95019.1
KEGG: mta:Moth_1551 N-terminal methylation.
 
 
 0.803
AEF94740.1
TIGRFAM: Competence protein ComEA, helix-hairpin-helix domain; PFAM: Soluble ligand binding domain; Helix-hairpin-helix motif; KEGG: drm:Dred_2512 helix-hairpin-helix repeat-containing competence protein ComEA; SMART: Helix-hairpin-helix DNA-binding motif, class 1.
  
  
 0.799
Your Current Organism:
Desulfotomaculum nigrificans
NCBI taxonomy Id: 868595
Other names: D. nigrificans CO-1-SRB, Desulfotomaculum carboxydivorans CO-1-SRB, Desulfotomaculum carboxydivorans DSM 14880, Desulfotomaculum nigrificans CO-1-SRB
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