Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AEF95326.1Sigma54 specific transcriptional regulator, Fis family; KEGG: drm:Dred_1544 sigma-54 dependent trancsriptional regulator; PFAM: RNA polymerase sigma factor 54, interaction; Helix-turn-helix, Fis-type; SMART: ATPase, AAA+ type, core. (572 aa)    
Predicted Functional Partners:
AEF95339.1
KEGG: drm:Dred_2992 RNA polymerase, sigma 54 subunit, RpoN; TIGRFAM: RNA polymerase sigma factor 54; PFAM: RNA polymerase sigma factor 54, DNA-binding; RNA polymerase sigma factor 54, core-binding; RNA polymerase sigma factor 54.
 
   
 0.784
AEF95327.1
PFAM: Protein of unknown function DUF917; KEGG: drm:Dred_1543 hypothetical protein.
       0.773
AEF95328.1
KEGG: drm:Dred_1542 N-methylhydantoinase A/acetone carboxylase beta subunit-like protein.
       0.732
AEF95325.1
PFAM: Permease, cytosine/purines, uracil, thiamine, allantoin; KEGG: drm:Dred_1545 permease for cytosine/purines, uracil, thiamine, allantoin.
       0.430
Your Current Organism:
Desulfotomaculum nigrificans
NCBI taxonomy Id: 868595
Other names: D. nigrificans CO-1-SRB, Desulfotomaculum carboxydivorans CO-1-SRB, Desulfotomaculum carboxydivorans DSM 14880, Desulfotomaculum nigrificans CO-1-SRB
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