STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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Gene Fusion
Cooccurrence
Coexpression
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[Homology]
Score
AEB11206.1Cytochrome c assembly protein; COGs: COG0755 ABC-type transport system involved in cytochrome c biogenesis permease component; InterPro IPR002541; KEGG: opr:Ocepr_0635 cytochrome c assembly protein; PFAM: Cytochrome c assembly protein; SPTR: Cytochrome c assembly protein; IMG reference gene:2504660038; PFAM: Cytochrome C assembly protein. (231 aa)    
Predicted Functional Partners:
AEB11205.1
COGs: COG2386 ABC-type transport system involved in cytochrome c biogenesis permease component; InterPro IPR003544; KEGG: opr:Ocepr_0631 cytochrome c-type biogenesis protein CcmB; PFAM: Cytochrome c-type biogenesis protein CcmB; SPTR: Cytochrome c-type biogenesis protein CcmB; IMG reference gene:2504660037; PFAM: CcmB protein; TIGRFAM: heme exporter protein CcmB.
 
 0.999
ccmE
Cytochrome c-type biogenesis protein ccmE; Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH. Belongs to the CcmE/CycJ family.
 
 
 0.996
AEB11204.1
Heme-transporting ATPase; COGs: COG1131 ABC-type multidrug transport system ATPase component; InterPro IPR003439:IPR003593; KEGG: opr:Ocepr_0630 ABC transporter related protein; PFAM: ABC transporter-like; PRIAM: Heme-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter related; IMG reference gene:2504660036; PFAM: ABC transporter; TIGRFAM: heme ABC exporter, ATP-binding protein CcmA.
  
 0.992
AEB12704.1
COGs: COG1138 Cytochrome c biogenesis factor; InterPro IPR002541; KEGG: opr:Ocepr_0638 cytochrome c assembly protein; PFAM: Cytochrome c assembly protein; SPTR: Cytochrome c assembly protein; IMG reference gene:2504661588; PFAM: Cytochrome C assembly protein; TIGRFAM: c-type cytochrome biogenesis protein CcmF.
 
  
 0.876
AEB12702.1
Cytochrome C biogenesis protein; Possible subunit of a heme lyase.
 
   
 0.864
AEB11203.1
COGs: COG0785 Cytochrome c biogenesis protein; InterPro IPR003834; KEGG: opr:Ocepr_0629 cytochrome c biogenesis protein transmembrane region; PFAM: Cytochrome c assembly protein, transmembrane domain; SPTR: Cytochrome c biogenesis protein transmembrane region; IMG reference gene:2504660035; PFAM: Cytochrome C biogenesis protein transmembrane region.
  
  
 0.739
AEB12918.1
Redoxin domain protein; COGs: COG0526 Thiol-disulfide isomerase and thioredoxins; InterPro IPR013740; KEGG: ttj:TTHA0840 thiol:disulfide interchange protein; PFAM: Redoxin; SPTR: Thiol:disulfide interchange protein tlpA; IMG reference gene:2504661818; PFAM: Prolipoprotein diacylglyceryl transferase; Redoxin.
 
  
 0.729
AEB11209.1
Rieske (2Fe-2S) iron-sulfur domain protein; COGs: COG0723 Rieske Fe-S protein; InterPro IPR017941; KEGG: opr:Ocepr_0642 rieske (2Fe-2S) iron-sulfur domain; PFAM: Rieske [2Fe-2S] iron-sulphur domain; SPTR: Rieske (2Fe-2S) iron-sulfur domain protein; IMG reference gene:2504660041; PFAM: Rieske [2Fe-2S] domain.
  
    0.587
AEB12597.1
uroporphyrin-III C-methyltransferase; COGs: COG0007 Uroporphyrinogen-III methylase; InterPro IPR006366:IPR000878; KEGG: msv:Mesil_3310 nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; PFAM: Tetrapyrrole methylase; PRIAM: Uroporphyrinogen-III C-methyltransferase; SPTR: Nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; TIGRFAM: Uroporphyrin-III C-methyltransferase, C-terminal; IMG reference gene:2504661479; PFAM: Tetrapyrrole (Corrin/Porphyrin) Methylases; TIGRFAM: uroporphyrin-III C-methyltransferase; Belongs to the precorrin [...]
  
    0.557
AEB12701.1
Cytochrome c class I; InterPro IPR019734:IPR001440:IPR003088; KEGG: mrb:Mrub_0843 TPR repeat-containing protein; PFAM: Cytochrome c, class I; Tetratricopeptide TPR-1; SPTR: TPR repeat-containing protein; IMG reference gene:2504661585; PFAM: Cytochrome c.
  
  
 0.555
Your Current Organism:
Marinithermus hydrothermalis
NCBI taxonomy Id: 869210
Other names: M. hydrothermalis DSM 14884, Marinithermus hydrothermalis DSM 14884, Marinithermus hydrothermalis T1, Marinithermus hydrothermalis str. DSM 14884, Marinithermus hydrothermalis strain DSM 14884
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