STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEB11404.1Rad52/22 double-strand break repair protein; COGs: COG4712 conserved hypothetical protein; InterPro IPR007232; KEGG: ttj:TTHA0081 hypothetical protein; PFAM: Rad52/22 double-strand break repair protein; SPTR: Hypothetical conserved protein; IMG reference gene:2504660241; PFAM: Rad52/22 family double-strand break repair protein. (194 aa)    
Predicted Functional Partners:
AEB11403.1
Metallophosphoesterase; InterPro IPR004843; KEGG: opr:Ocepr_1807 metallophosphoesterase; PFAM: Metallo-dependent phosphatase; SPTR: Metallophosphoesterase; IMG reference gene:2504660240.
       0.804
rsmA
Ribosomal RNA small subunit methyltransferase A; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.
       0.671
AEB11402.1
COGs: COG1329 Transcriptional regulators similar to M. xanthus CarD; InterPro IPR003711; KEGG: msv:Mesil_2613 transcriptional regulator, CarD family; PFAM: Transcription factor CarD; SPTR: Transcriptional regulator, CarD family; IMG reference gene:2504660239; PFAM: CarD-like/TRCF domain.
       0.661
AEB11405.1
Hypothetical protein; IMG reference gene:2504660243.
       0.448
AEB11400.1
PfkB domain protein; COGs: COG0524 Sugar kinase ribokinase family; InterPro IPR011611; KEGG: msv:Mesil_2615 PfkB domain protein; PFAM: Carbohydrate/purine kinase; SPTR: PfkB domain protein; IMG reference gene:2504660237; PFAM: pfkB family carbohydrate kinase; Belongs to the carbohydrate kinase PfkB family.
       0.444
Your Current Organism:
Marinithermus hydrothermalis
NCBI taxonomy Id: 869210
Other names: M. hydrothermalis DSM 14884, Marinithermus hydrothermalis DSM 14884, Marinithermus hydrothermalis T1, Marinithermus hydrothermalis str. DSM 14884, Marinithermus hydrothermalis strain DSM 14884
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.