STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEB11976.1Peptidase M50; InterPro IPR008915; KEGG: opr:Ocepr_1148 peptidase M50; PFAM: Peptidase M50; SPTR: Putative uncharacterized protein TTHA0833; IMG reference gene:2504660830; PFAM: Peptidase family M50. (223 aa)    
Predicted Functional Partners:
AEB11977.1
Peptidase M50; InterPro IPR008915; KEGG: opr:Ocepr_1149 hypothetical protein; PFAM: Peptidase M50; SPTR: Membrane metalloprotease; IMG reference gene:2504660831; PFAM: Peptidase family M50.
 
    
0.848
AEB11978.1
Polynucleotide adenylyltransferase region; COGs: COG0617 tRNA nucleotidyltransferase/poly(A) polymerase; InterPro IPR001667:IPR003156:IPR000644:IPR002646; KEGG: opr:Ocepr_1150 polynucleotide adenylyltransferase region; PFAM: Poly A polymerase, head domain; Cystathionine beta-synthase, core; Phosphoesterase, RecJ-like; Phosphoesterase, DHHA1; SMART: Cystathionine beta-synthase, core; SPTR: Polynucleotide adenylyltransferase region; IMG reference gene:2504660832; PFAM: DHHA1 domain; DHH family; CBS domain; Poly A polymerase head domain; Belongs to the tRNA nucleotidyltransferase/poly(A) [...]
       0.817
mfd
Transcription-repair coupling factor; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily.
       0.726
AEB11980.1
degV family protein; COGs: COG1307 conserved hypothetical protein; InterPro IPR003797; KEGG: tth:TTC0532 DegV protein; PFAM: DegV; SPTR: DegV protein; TIGRFAM: DegV; IMG reference gene:2504660834; PFAM: Uncharacterised protein, DegV family COG1307; TIGRFAM: EDD domain protein, DegV family.
       0.726
AEB11981.1
COGs: COG4370 conserved hypothetical protein; InterPro IPR019994; KEGG: msv:Mesil_1973 hypothetical protein; SPTR: Putative uncharacterized protein; TIGRFAM: Conserved hypothetical protein CHP03492; IMG reference gene:2504660835; TIGRFAM: conserved hypothetical protein.
       0.533
Your Current Organism:
Marinithermus hydrothermalis
NCBI taxonomy Id: 869210
Other names: M. hydrothermalis DSM 14884, Marinithermus hydrothermalis DSM 14884, Marinithermus hydrothermalis T1, Marinithermus hydrothermalis str. DSM 14884, Marinithermus hydrothermalis strain DSM 14884
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