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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEB12638.1CRISPR-associated RAMP protein, Cmr4 family; COGs: COG1336 Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily); InterPro IPR013410:IPR005537; KEGG: tth:TT_P0118 hypothetical protein; PFAM: Protein of unknown function DUF324; SPTR: Hypothetical conserved protein; TIGRFAM: CRISPR-associated RAMP Cmr4; IMG reference gene:2504661521; PFAM: RAMP superfamily; TIGRFAM: CRISPR type III-B/RAMP module RAMP protein Cmr4. (284 aa)    
Predicted Functional Partners:
AEB12636.1
CRISPR-associated RAMP protein, Cmr6 family; COGs: COG1604 Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily); InterPro IPR010172:IPR005537; KEGG: ttj:TTHB165 hypothetical protein; PFAM: Protein of unknown function DUF324; SPTR: CRISPR-associated RAMP protein, Cmr6 family; TIGRFAM: CRISPR-associated protein, TM1791; IMG reference gene:2504661519; TIGRFAM: CRISPR type III-B/RAMP module RAMP protein Cmr6.
 
 
 
 0.991
AEB12641.1
CRISPR-associated protein, Crm2 family; COGs: COG1353 hydrolase of the HD superfamily (permuted catalytic motifs); InterPro IPR013407; KEGG: tth:TT_P0115 hypothetical protein; SPTR: CRISPR-associated protein, Crm2 family; TIGRFAM: CRISPR-associated protein Crm2; IMG reference gene:2504661524; PFAM: CRISPR-associated protein; TIGRFAM: CRISPR-associated protein Cas10/Cmr2, subtype III-B.
 
 
 
 0.990
AEB12639.1
COGs: COG1367 Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily); InterPro IPR007522:IPR005537; KEGG: ttj:TTHB162 hypothetical protein; PFAM: Protein of unknown function DUF324; SPTR: Putative uncharacterized protein TTHB162; TIGRFAM: CRISPR-associated protein TM1795 family, N-terminal; IMG reference gene:2504661522; TIGRFAM: CRISPR type III-B/RAMP module RAMP protein Cmr1.
 
 
 
 0.975
AEB12637.1
CRISPR-associated protein, Cmr5 family; InterPro IPR010160; KEGG: ttj:TTHB164 hypothetical protein; PFAM: CRISPR-associated protein, Cmr5; SPTR: Putative uncharacterized protein TTHB164; TIGRFAM: CRISPR-associated protein, Cmr5; IMG reference gene:2504661520; PFAM: CRISPR-associated protein (Cas_Cmr5).
   
 
 0.971
AEB12640.1
CRISPR-associated protein, Cmr3; COGs: COG1769 Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily); InterPro IPR019117; KEGG: ttj:TTHB161 hypothetical protein; PFAM: CRISPR-associated protein, Cmr3; SPTR: Putative uncharacterized protein TTHB161; IMG reference gene:2504661523; PFAM: CRISPR-associated protein (Cas_Cmr3); TIGRFAM: CRISPR type III-B/RAMP module-associated protein Cmr3.
 
   
 0.960
AEB10944.1
CRISPR-associated protein, Csm1 family; COGs: COG1353 hydrolase of the HD superfamily (permuted catalytic motifs); InterPro IPR013408; KEGG: mrb:Mrub_0215 Csm1 family CRISPR-associated protein; SPTR: CRISPR-associated protein, Csm1 family; TIGRFAM: CRISPR-associated protein Csm1; IMG reference gene:2504659752; TIGRFAM: CRISPR-associated protein Cas10/Csm1, subtype III-A/MTUBE.
 
 
 
 0.835
AEB12642.1
CRISPR-associated protein DxTHG motif protein; InterPro IPR013383:IPR011742; KEGG: csc:Csac_0044 hypothetical protein; PFAM: CRISPR-associated protein, TM1812; SPTR: CRISPR-associated protein DxTHG motif; TIGRFAM: CRISPR-associated protein DxTHG, conserved site; IMG reference gene:2504661525; PFAM: CRISPR-associated protein (cas_TM1812); TIGRFAM: CRISPR-associated protein, TM1812 family.
     
 0.644
pyrF
COGs: COG0284 Orotidine-5'-phosphate decarboxylase; HAMAP: Orotidine 5'-phosphate decarboxylase, type 2; InterPro IPR011995:IPR001754; KEGG: msv:Mesil_2713 orotidine 5'-phosphate decarboxylase; PFAM: Orotidine 5'-phosphate decarboxylase domain; PRIAM: Orotidine-5'-phosphate decarboxylase; SMART: Orotidine 5'-phosphate decarboxylase domain; SPTR: Orotidine 5'-phosphate decarboxylase; TIGRFAM: Orotidine 5'-phosphate decarboxylase, type 2; IMG reference gene:2504661518; PFAM: Orotidine 5'-phosphate decarboxylase / HUMPS family; TIGRFAM: orotidine 5'-phosphate decarboxylase, subfamily 2; B [...]
       0.636
AEB12643.1
CRISPR-associated protein, TIGR02710 family; InterPro IPR014082; KEGG: tth:TT_P0107 hypothetical protein; SPTR: Putative uncharacterized protein; TIGRFAM: CRISPR-associated protein, Cas02710; IMG reference gene:2504661526; PFAM: CRISPR-associated protein (Cas_Cas02710); TIGRFAM: CRISPR-associated protein, TIGR02710 family.
       0.588
AEB10939.1
CRISPR-associated protein Cas6; COGs: COG5551 conserved hypothetical protein; InterPro IPR010156:IPR019267; KEGG: tth:TTC1927 hypothetical protein; PFAM: Protein of unknown function DUF2276; SPTR: Hypothetical conserved protein; TIGRFAM: CRISPR-associated protein, Cas6; IMG reference gene:2504659747; PFAM: Uncharacterized conserved protein (DUF2276); TIGRFAM: CRISPR-associated endoribonuclease Cas6.
 
   
 0.560
Your Current Organism:
Marinithermus hydrothermalis
NCBI taxonomy Id: 869210
Other names: M. hydrothermalis DSM 14884, Marinithermus hydrothermalis DSM 14884, Marinithermus hydrothermalis T1, Marinithermus hydrothermalis str. DSM 14884, Marinithermus hydrothermalis strain DSM 14884
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