STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEJ60690.1L-fucose isomerase-like protein; PFAM: L-fucose isomerase, C-terminal domain; COGs: COG2407 L-fucose isomerase and related protein; InterPro IPR012889:IPR015888; KEGG: ssm:Spirs_1033 L-fucose isomerase; PFAM: L-fucose isomerase-like, C-terminal; L-fucose isomerase, N-terminal-2; SPTR: L-fucose isomerase. (402 aa)    
Predicted Functional Partners:
rbsD
D-ribose pyranase; Catalyzes the interconversion of beta-pyran and beta-furan forms of D-ribose.
     
 0.760
AEJ60689.1
MULE transposase, conserved domain-containing protein; Required for the transposition of the insertion element.
       0.567
AEJ60706.1
PFAM: RbsD / FucU transport protein family; COGs: COG4154 Fucose dissimilation pathway protein FucU; InterPro IPR007721; KEGG: RbsD or FucU transport; PFAM: RbsD/FucU transport; SPTR: RbsD or FucU transport; Belongs to the RbsD / FucU family.
    
 0.548
rbsK
PfkB domain protein; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.
       0.482
AEJ60688.1
PFAM: RNA pseudouridylate synthase; TIGRFAM: pseudouridine synthase, RluA family; COGs: COG0564 Pseudouridylate synthase 23S RNA-specific; InterPro IPR002942:IPR006145; KEGG: sta:STHERM_c04380 ribosomal large subunit pseudouridine synthase C; PFAM: Pseudouridine synthase, RsuA and RluB/C/D/E/F; RNA-binding S4; SPTR: Pseudouridine synthase.
       0.450
Your Current Organism:
Spirochaeta thermophila
NCBI taxonomy Id: 869211
Other names: S. thermophila DSM 6578, Spirochaeta thermophila DSM 6578, Spirochaeta thermophila str. DSM 6578, Spirochaeta thermophila strain DSM 6578
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