STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEJ61062.1LVIVD repeat-containing protein; PFAM: LVIVD repeat; COGs: COG5276 conserved hypothetical protein; InterPro IPR013211; KEGG: sta:STHERM_c14450 hypothetical protein; PFAM: LVIVD; SPTR: LVIVD repeat-containing protein. (323 aa)    
Predicted Functional Partners:
birA
biotin/acetyl-CoA-carboxylase ligase; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family.
       0.470
AEJ60390.1
PFAM: Major Facilitator Superfamily; PBS lyase HEAT-like repeat; HEAT repeat; COGs: COG1413 FOG: HEAT repeat; InterPro IPR011701:IPR004155; KEGG: sta:STHERM_c01150 major facilitator superfamily MFS_1; PFAM: Major facilitator superfamily MFS-1; PBS lyase HEAT-like repeat; SMART: PBS lyase HEAT-like repeat; SPTR: Major facilitator superfamily MFS_1.
 
     0.426
AEJ60440.1
PFAM: Glutaredoxin; TIGRFAM: Glutaredoxin-like protein, YruB-family; COGs: COG0695 Glutaredoxin and related protein; InterPro IPR002109:IPR011911; KEGG: sta:STHERM_c01650 hypothetical protein; PFAM: Glutaredoxin; SPTR: Putative uncharacterized protein; TIGRFAM: Glutaredoxin-like protein, YruB.
  
     0.414
Your Current Organism:
Spirochaeta thermophila
NCBI taxonomy Id: 869211
Other names: S. thermophila DSM 6578, Spirochaeta thermophila DSM 6578, Spirochaeta thermophila str. DSM 6578, Spirochaeta thermophila strain DSM 6578
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