STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEJ62033.1KEGG: sta:STHERM_c17020 hypothetical protein; SPTR: Putative uncharacterized protein. (161 aa)    
Predicted Functional Partners:
rsgA-2
Sigma 54 interacting domain protein; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit; Belongs to the TRAFAC class YlqF/YawG GTPase family. RsgA subfamily.
       0.551
murI
Glutamate racemase; Provides the (R)-glutamate required for cell wall biosynthesis.
       0.551
AEJ62036.1
KEGG: sta:STHERM_c17060 hypothetical protein; SPTR: Putative uncharacterized protein; manually curated.
       0.551
AEJ62032.1
PFAM: PEGA domain; Curli production assembly/transport component CsgG; InterPro IPR013229; KEGG: tsc:TSC_c03240 S-layer protein; PFAM: PEGA; SPTR: PEGA domain protein.
       0.480
AEJ62037.1
Pentapeptide repeat protein; COGs: COG1357 Uncharacterized low-complexity protein; InterPro IPR001646; KEGG: sta:STHERM_c17050 pentapeptide protein; PFAM: Pentapeptide repeat; SPTR: Pentapeptide repeat protein.
       0.412
AEJ62038.1
PFAM: Metallo-beta-lactamase superfamily; COGs: COG0491 Zn-dependent hydrolase including glyoxylase; KEGG: sta:STHERM_c17070 beta lactamase like protein; SPTR: Putative uncharacterized protein.
       0.412
Your Current Organism:
Spirochaeta thermophila
NCBI taxonomy Id: 869211
Other names: S. thermophila DSM 6578, Spirochaeta thermophila DSM 6578, Spirochaeta thermophila str. DSM 6578, Spirochaeta thermophila strain DSM 6578
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.