STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFM10773.1PFAM: Thioesterase superfamily; TIGRFAM: acyl-CoA thioester hydrolase, YbgC/YbaW family; COGs: COG0824 thioesterase; InterPro IPR006683; KEGG: fba:FIC_00199 predicted thioesterase; PFAM: Thioesterase superfamily; SPTR: Putative uncharacterized protein. (177 aa)    
Predicted Functional Partners:
AFM13224.1
PFAM: NUDIX domain; InterPro IPR000086; KEGG: ipo:Ilyop_0684 NUDIX hydrolase; PFAM: NUDIX hydrolase domain; SPTR: NUDIX hydrolase.
 
     0.596
AFM10774.1
Hypothetical protein.
       0.515
AFM11447.1
COGs: COG0331 (acyl-carrier-protein) S-malonyltransferase; KEGG: lbf:LBF_0234 [acyl-carrier protein] S-malonyltransferase; SPTR: Fatty acid synthase subunit beta.
  
 
 0.487
AFM12991.1
PFAM: Protein of unknown function (DUF2490); InterPro IPR019619; KEGG: dfe:Dfer_0843 hypothetical protein; PFAM: Protein of unknown function DUF2490; SPTR: Putative uncharacterized protein.
 
     0.487
AFM12290.1
PFAM: Fatty acid desaturase; COGs: COG1398 Fatty-acid desaturase; InterPro IPR005804; KEGG: lic:LIC20052 fatty acid desaturase; PFAM: Fatty acid desaturase, type 1; SPTR: Fatty-acid desaturase.
  
     0.477
acpP
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
  
 
 0.435
Your Current Organism:
Turneriella parva
NCBI taxonomy Id: 869212
Other names: T. parva DSM 21527, Turneriella parva DSM 21527, Turneriella parva H, Turneriella parva NCTC 11395, Turneriella parva str. DSM 21527, Turneriella parva strain DSM 21527
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.