STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFM10882.1KEGG: shg:Sph21_3940 hypothetical protein; SPTR: Putative lipoprotein. (486 aa)    
Predicted Functional Partners:
AFM10881.1
PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; TIGRFAM: TonB-dependent receptor; COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910:IPR000531; KEGG: cts:Ctha_1737 TonB-dependent receptor; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; SPTR: TonB-dependent receptor.
     0.926
AFM13571.1
PFAM: Tetratricopeptide repeat; COGs: COG1729 conserved hypothetical protein; InterPro IPR001440:IPR013105:IPR011717:IPR019734; KEGG: sru:SRU_1584 TPR repeat-containing protein; PFAM: Tetratricopeptide TPR-1; Tetratricopeptide TPR2; Tetratricopeptide TPR-4; SPTR: Tetratricopeptide repeat family.
  
 
 0.756
AFM11070.1
PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; COGs: COG4206 Outer membrane cobalamin receptor protein; InterPro IPR012910:IPR000531; KEGG: lil:LA_3149 TonB-dependent outer membrane hemin receptor; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; SPTR: TonB-dependent outer membrane hemin receptor.
 
   
 0.725
AFM11227.1
Hypothetical protein; PFAM: Surface antigen; COGs: COG4775 Outer membrane protein/protective antigen OMA87; InterPro IPR011659; KEGG: rmr:Rmar_1730 WD40 domain-containing protein beta propeller; SPTR: WD40 domain protein beta Propeller.
 
 
 0.655
AFM10883.1
Hypothetical protein.
       0.628
AFM13226.1
PFAM: TonB-dependent Receptor Plug Domain; InterPro IPR012910:IPR000531; KEGG: lbf:LBF_2912 TonB dependent receptor; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: TonB dependent receptor.
 
     0.606
AFM13143.1
PFAM: TonB-dependent Receptor Plug Domain; InterPro IPR012910; KEGG: lbf:LBF_2912 TonB dependent receptor; PFAM: TonB-dependent receptor, plug; SPTR: TonB dependent receptor.
 
   
 0.581
AFM11759.1
PFAM: Glycoside hydrolase 97; InterPro IPR019563; KEGG: psn:Pedsa_2572 glycoside hydrolase 97; PFAM: Glycoside hydrolase 97; SPTR: Glycoside hydrolase 97.
 
     0.576
AFM10694.1
Tetratricopeptide TPR_2 repeat-containing protein; PFAM: Tetratricopeptide repeat; InterPro IPR019734:IPR013105; KEGG: lbl:LBL_0308 TPR repeat-containing protein; PFAM: Tetratricopeptide TPR2; SPTR: Putative uncharacterized protein.
  
    0.511
AFM12350.1
PFAM: Sodium:solute symporter family; TIGRFAM: transporter, SSS family; COGs: COG4146 symporter; InterPro IPR001734:IPR019900; KEGG: amc:MADE_00234 putative sodium/hexose cotransport protein; PFAM: Sodium/solute symporter; SPTR: Putative uncharacterized protein; TIGRFAM: Sodium/solute symporter, subgroup; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
  
     0.502
Your Current Organism:
Turneriella parva
NCBI taxonomy Id: 869212
Other names: T. parva DSM 21527, Turneriella parva DSM 21527, Turneriella parva H, Turneriella parva NCTC 11395, Turneriella parva str. DSM 21527, Turneriella parva strain DSM 21527
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.