STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
vapC-2PilT protein domain protein; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family. (133 aa)    
Predicted Functional Partners:
AFM10989.1
Hypothetical protein.
       0.773
AFM12107.1
SpoVT/AbrB domain-containing protein; PFAM: SpoVT / AbrB like domain; InterPro IPR007159; KEGG: lic:LIC12659 putative virulence-associated protein; PFAM: Transcription regulator AbrB/SpoV, predicted; SPTR: Putative virulence-associated protein.
 
 
 0.603
AFM14030.1
PilT protein domain protein; PFAM: PIN domain; COGs: COG2402 nucleic acid-binding protein contains PIN domain; InterPro IPR002716; KEGG: mar:MAE_12790 hypothetical protein; PFAM: PilT protein, N-terminal; SPTR: Putative uncharacterized protein; manually curated.
 
   
 0.523
AFM12118.1
KEGG: mar:MAE_10540 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.514
vapC-9
PilT protein domain protein; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family.
  
     0.483
AFM12413.1
KEGG: gca:Galf_1352 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.480
AFM12963.1
KEGG: cph:Cpha266_2645 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.470
AFM11498.1
PFAM: Uncharacterised protein family (UPF0150); InterPro IPR005357; KEGG: cyp:PCC8801_0001 hypothetical protein; PFAM: Uncharacterised protein family UPF0150; SPTR: Putative uncharacterized protein.
 
     0.452
vapC-6
PilT protein domain protein; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family.
  
     0.434
AFM13307.1
PFAM: Protein of unknown function (DUF497); KEGG: nhl:Nhal_0122 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.428
Your Current Organism:
Turneriella parva
NCBI taxonomy Id: 869212
Other names: T. parva DSM 21527, Turneriella parva DSM 21527, Turneriella parva H, Turneriella parva NCTC 11395, Turneriella parva str. DSM 21527, Turneriella parva strain DSM 21527
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.