STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFM11088.1KEGG: lbl:LBL_1284 hypothetical protein; SPTR: Putative uncharacterized protein. (259 aa)    
Predicted Functional Partners:
AFM11089.1
Putative transcriptional regulator, Crp/Fnr family; PFAM: Cyclic nucleotide-binding domain; COGs: COG0664 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase; InterPro IPR000595; KEGG: lbl:LBL_2700 cAMP-binding protein, regulatory protein; PFAM: Cyclic nucleotide-binding; SMART: Cyclic nucleotide-binding; SPTR: cAMP-binding protein, regulatory protein.
       0.642
AFM11090.1
Putative transcriptional regulator, Crp/Fnr family; PFAM: Cyclic nucleotide-binding domain; COGs: COG0664 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase; InterPro IPR000595:IPR019734; KEGG: lbf:LBF_1109 cAMP-binding protein; PFAM: Cyclic nucleotide-binding; SMART: Cyclic nucleotide-binding; Tetratricopeptide repeat; SPTR: Putative cAMP binding protein.
       0.642
AFM11091.1
PFAM: Amidohydrolase family; COGs: COG0402 Cytosine deaminase and related metal-dependent hydrolase; InterPro IPR006680; KEGG: lic:LIC10270 chlorohydrolase family protein; PFAM: Amidohydrolase 1; SPTR: Metal-dependent hydrolase.
       0.642
AFM11092.1
PFAM: Peptidase family M23; COGs: COG4942 Membrane-bound metallopeptidase; InterPro IPR016047; KEGG: nmi:NMO_1173 hypothetical protein; PFAM: Peptidase M23; SPTR: Putative uncharacterized protein.
       0.642
AFM11087.1
Hypothetical protein; PFAM: Septum formation initiator.
       0.628
AFM11086.1
Hypothetical protein; KEGG: bhl:Bache_0654 histidine kinase; SPTR: Predicted periplasmic ligand-binding sensor domain.
       0.615
AFM11093.1
PFAM: Protein of unknown function, DUF583; COGs: COG1664 Integral membrane protein CcmA involved in cell shape determination; InterPro IPR007607; KEGG: lbf:LBF_1377 hypothetical protein; PFAM: Protein of unknown function DUF583; SPTR: Putative uncharacterized protein.
       0.434
Your Current Organism:
Turneriella parva
NCBI taxonomy Id: 869212
Other names: T. parva DSM 21527, Turneriella parva DSM 21527, Turneriella parva H, Turneriella parva NCTC 11395, Turneriella parva str. DSM 21527, Turneriella parva strain DSM 21527
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.