STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
vapC-3PIN domain protein family protein; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family. (143 aa)    
Predicted Functional Partners:
AFM11190.1
Antitoxin; KEGG: dac:Daci_2799 antitoxin.
       0.773
AFM11192.1
PFAM: Protein of unknown function (DUF1272); COGs: COG3813 conserved hypothetical protein; InterPro IPR010696; KEGG: nde:NIDE1073 hypothetical protein; PFAM: Protein of unknown function DUF1272; SPTR: Putative uncharacterized protein.
 
     0.609
AFM11191.1
KEGG: gur:Gura_1403 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.541
AFM11188.1
Restriction endonuclease, type II, SinI; PFAM: SinI restriction endonuclease; InterPro IPR019070; KEGG: fsu:Fisuc_0932 hypothetical protein; PFAM: Restriction endonuclease, type II, SinI; SPTR: Type II restriction enzyme.
       0.538
vapC-4
PilT protein domain protein; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family.
 
     0.470
AFM11908.1
PilT protein domain protein; PFAM: PIN domain; InterPro IPR002716; KEGG: avn:Avin_46630 PIN-domain protein; PFAM: PilT protein, N-terminal; SPTR: PIN-domain protein.
 
     0.428
Your Current Organism:
Turneriella parva
NCBI taxonomy Id: 869212
Other names: T. parva DSM 21527, Turneriella parva DSM 21527, Turneriella parva H, Turneriella parva NCTC 11395, Turneriella parva str. DSM 21527, Turneriella parva strain DSM 21527
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.