STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFM11496.1PFAM: N-6 DNA Methylase; KEGG: tra:Trad_0119 type III restriction system methylase; SPTR: Type III restriction system methylase. (223 aa)    
Predicted Functional Partners:
AFM10718.1
PFAM: Type I restriction modification DNA specificity domain; COGs: COG0732 Restriction endonuclease S subunits; InterPro IPR000055; KEGG: xca:xccb100_3278 type I site-specific deoxyribonuclease (specificity subunit); PFAM: Restriction endonuclease, type I, S subunit, EcoBI; SPTR: Putative restriction endonuclease S subunits.
  
 
 0.788
AFM11218.1
PFAM: Type I restriction modification DNA specificity domain; COGs: COG0732 Restriction endonuclease S subunits; InterPro IPR000055; KEGG: ftn:FTN_1154 type I restriction-modification system, subunit S; PFAM: Restriction endonuclease, type I, S subunit, EcoBI; SPTR: Type I restriction-modification system, subunit S.
  
 
 0.788
AFM13311.1
PFAM: Type I restriction modification DNA specificity domain; COGs: COG0732 Restriction endonuclease S subunits; InterPro IPR000055; KEGG: par:Psyc_0878 type I restriction modification system methylase; PFAM: Restriction endonuclease, type I, S subunit, EcoBI; SPTR: Probable type I restriction modification system methylase.
  
 
 0.788
AFM11222.1
PFAM: EcoEI R protein C-terminal; Type III restriction enzyme, res subunit; COGs: COG4096 Type I site-specific restriction-modification system R (restriction) subunit and related helicase; InterPro IPR014001:IPR007409:IPR006935:IPR013670; KEGG: Type I site-specific deoxyribonuclease; PFAM: Restriction endonuclease, type I, EcoEI, R subunit/Type III, Res subunit, C-terminal; Restriction endonuclease, type I, R subunit/Type III, Res subunit; Restriction endonuclease, type I, EcoRI, R subunit/Type III, Res subunit, N-terminal; SMART: DEAD-like helicase, N-terminal; SPTR: Type I restrictio [...]
  
 
 0.670
AFM10716.1
PFAM: Type I restriction enzyme R protein N terminus (HSDR_N); Type III restriction enzyme, res subunit; COGs: COG0610 Type I site-specific restriction-modification system R (restriction) subunit and related helicase; InterPro IPR014001:IPR007409:IPR006935; KEGG: tbd:Tbd_2685 DEAD/DEAH box helicase; PFAM: Restriction endonuclease, type I, EcoRI, R subunit/Type III, Res subunit, N-terminal; Restriction endonuclease, type I, R subunit/Type III, Res subunit; SMART: DEAD-like helicase, N-terminal; SPTR: DEAD/DEAH box helicase.
  
 
 0.654
AFM11209.1
KEGG: dap:Dacet_0577 hypothetical protein; SPTR: Putative uncharacterized protein.
  
 
 0.654
AFM13316.1
Type I site-specific deoxyribonuclease, HsdR family; Subunit R is required for both nuclease and ATPase activities, but not for modification.
  
 
 0.654
AFM11495.1
PFAM: Alcohol dehydrogenase GroES-like domain; Zinc-binding dehydrogenase; COGs: COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenase; InterPro IPR013154:IPR013149; KEGG: lil:LA_2629 alcohol dehydrogenase; PFAM: Alcohol dehydrogenase GroES-like; Alcohol dehydrogenase, zinc-binding; SPTR: Alcohol dehydrogenase.
       0.576
AFM11494.1
PFAM: Bacterial regulatory proteins, tetR family; InterPro IPR001647; KEGG: lbf:LBF_3241 AcrR family transcriptional regulator; PFAM: Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal; SPTR: Putative transcriptional regulator, TetR family.
       0.415
Your Current Organism:
Turneriella parva
NCBI taxonomy Id: 869212
Other names: T. parva DSM 21527, Turneriella parva DSM 21527, Turneriella parva H, Turneriella parva NCTC 11395, Turneriella parva str. DSM 21527, Turneriella parva strain DSM 21527
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