STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFM11587.1PFAM: HAMP domain; Stage II sporulation protein E (SpoIIE); InterPro IPR003660:IPR001932:IPR010822; KEGG: lbf:LBF_1801 hypothetical protein; PFAM: Sporulation stage II, protein E C-terminal; HAMP linker domain; SMART: HAMP linker domain; Protein phosphatase 2C-related; SPTR: Putative histidine kinase sensor protein; putative membrane protein. (676 aa)    
Predicted Functional Partners:
AFM13294.1
Flagellar motor switch protein FliN; FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation. Belongs to the FliN/MopA/SpaO family.
  
 
 0.829
AFM11795.1
Signal transduction histidine kinase, nitrogen specific, NtrB; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Response regulator receiver domain; His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS domain S-box; COGs: COG3852 Signal transduction histidine kinase nitrogen specific; InterPro IPR000014:IPR001610:IPR003018:IPR003661:IPR003594:IPR0017 89:IPR013767:IPR013655:IPR013656; KEGG: ava:Ava_0198 multi-sensor hybrid histidine kinase; PFAM: ATP-binding region, ATPase-like; PAS fold-3; GAF; PAS fold; PAS fold-4; Signal transduction histidine kinase, subgroup 1 [...]
  
 
 0.828
AFM12192.1
Flagellar hook-associated protein FlgK; PFAM: Domain of unknown function (DUF1078); TIGRFAM: flagellar hook-associated protein FlgK; COGs: COG1256 Flagellar hook-associated protein; InterPro IPR010930:IPR002371; KEGG: lic:LIC13451 flagellar hook-associated protein FlgK; PFAM: Protein of unknown function DUF1078, C-terminal; SPTR: Flagellar hook-associated protein 1; TIGRFAM: Flagellar hook-associated protein, FlgK.
  
 
 0.819
AFM14667.1
Flagellar basal-body rod protein FlgB; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body.
 
  
 0.805
AFM11779.1
CheA signal transduction histidine kinase; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; GAF domain; Hpt domain; COGs: COG0643 Chemotaxis protein histidine kinase and related kinase; InterPro IPR003018:IPR008207:IPR003594; KEGG: dno:DNO_0869 two-component sensor kinase; PFAM: GAF; Signal transduction histidine kinase, phosphotransfer (Hpt) region; ATP-binding region, ATPase-like; SMART: GAF; Signal transduction histidine kinase, phosphotransfer (Hpt) region; ATP-binding region, ATPase-like; SPTR: Two-component sensor kinase.
  
 
 0.804
AFM11167.1
Diguanylate phosphodiesterase; PFAM: EAL domain; COGs: COG2200 FOG: EAL domain; InterPro IPR001633; KEGG: lic:LIC20198 hypothetical protein; PFAM: Diguanylate phosphodiesterase, predicted; SPTR: Putative uncharacterized protein.
 
 
 0.798
AFM12098.1
Diguanylate cyclase/phosphodiesterase with GAF sensor; PFAM: EAL domain; GAF domain; GGDEF domain; COGs: COG2200 FOG: EAL domain; InterPro IPR003018:IPR000160:IPR001633; KEGG: bse:Bsel_0666 GAF sensor-containing diguanylate cyclase/phosphodiesterase; PFAM: Diguanylate phosphodiesterase, predicted; GAF; Diguanylate cyclase, predicted; SMART: Diguanylate phosphodiesterase, predicted; GAF; Diguanylate cyclase, predicted; SPTR: Putative diguanylate cyclase/phosphodiesterase (GGDEF & EALdomains) with PAS/PAC sensor.
  
 
 0.776
AFM11586.1
TIGRFAM: phosphate/phosphite/phosphonate ABC transporters, periplasmic binding protein; COGs: COG3221 ABC-type phosphate/phosphonate transport system periplasmic component; InterPro IPR005770; KEGG: cno:NT01CX_0607 methyl-accepting chemotaxis protein; SPTR: Methyl-accepting chemotaxis protein; TIGRFAM: Phosphonate-binding periplasmic protein.
       0.775
AFM12064.1
PFAM: CheW-like domain; COGs: COG0835 Chemotaxis signal transduction protein; InterPro IPR002545; KEGG: aoe:Clos_1192 CheW protein; PFAM: CheW-like protein; SMART: CheW-like protein; SPTR: CheW protein.
  
 
 0.755
AFM14496.1
PFAM: CheW-like domain; COGs: COG0835 Chemotaxis signal transduction protein; InterPro IPR002545; KEGG: dma:DMR_23770 chemotaxis protein CheW; PFAM: CheW-like protein; SMART: CheW-like protein; SPTR: CheW protein.
  
 
 0.755
Your Current Organism:
Turneriella parva
NCBI taxonomy Id: 869212
Other names: T. parva DSM 21527, Turneriella parva DSM 21527, Turneriella parva H, Turneriella parva NCTC 11395, Turneriella parva str. DSM 21527, Turneriella parva strain DSM 21527
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