STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFM11662.1Transcriptional regulator, AraC family; COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR018060:IPR000005; KEGG: sno:Snov_2699 transcriptional regulator, AraC family; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: Transcriptional regulator, AraC family. (252 aa)    
Predicted Functional Partners:
AFM11663.1
PFAM: Protein of unknown function (DUF3703); KEGG: lbf:LBF_3029 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.580
AFM14370.1
Transcriptional regulator, XRE family with cupin sensor; PFAM: Cupin domain; Helix-turn-helix; InterPro IPR001387:IPR013096; KEGG: acp:A2cp1_0921 transcriptional regulator, XRE family; PFAM: Helix-turn-helix type 3; Cupin 2, conserved barrel; SMART: Helix-turn-helix type 3; SPTR: Transcriptional regulator, XRE family.
 
 
 0.532
AFM11661.1
Phenylacetic acid degradation-related protein; PFAM: Thioesterase superfamily; InterPro IPR003736:IPR006683; KEGG: sur:STAUR_2288 thioesterase family protein; PFAM: Thioesterase superfamily; SPTR: Phenylacetic acid degradation-related protein; TIGRFAM: Phenylacetic acid degradation-related protein.
       0.521
AFM13738.1
Transcriptional regulator, AraC family; COGs: COG4977 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain; InterPro IPR018060:IPR000005; KEGG: lbf:LBF_2892 AraC-like transcriptional regulator; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: Putative AraC-type transcriptional regulator.
 
 
 0.454
AFM11363.1
PFAM: Amidohydrolase family; COGs: COG3653 N-acyl-D-aspartate/D-glutamate deacylase; InterPro IPR006680; KEGG: hypothetical protein; PFAM: Amidohydrolase 1; SPTR: N-acyl-D-glutamate amidohydrolase.
  
    0.450
AFM11664.1
COGs: COG3934 Endo-beta-mannanase; KEGG: psu:Psesu_0448 mannan endo-1,4-beta-mannosidase; SPTR: Endo-1,4-beta-mannosidase; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
       0.412
Your Current Organism:
Turneriella parva
NCBI taxonomy Id: 869212
Other names: T. parva DSM 21527, Turneriella parva DSM 21527, Turneriella parva H, Turneriella parva NCTC 11395, Turneriella parva str. DSM 21527, Turneriella parva strain DSM 21527
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