STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFM11833.1PFAM: Peptidase family M48; COGs: COG4783 Putative Zn-dependent protease contains TPR repeats; InterPro IPR001915; KEGG: lbf:LBF_3147 zinc dependent protease; PFAM: Peptidase M48, Ste24p; SPTR: Zinc dependent protease. (397 aa)    
Predicted Functional Partners:
AFM11832.1
PFAM: Bacterial protein of unknown function (DUF898); COGs: COG4269 membrane protein; InterPro IPR010295; KEGG: lbf:LBF_3146 hypothetical protein; PFAM: Protein of unknown function DUF898, transmembrane bacterial; SPTR: Putative uncharacterized protein.
 
     0.838
AFM11830.1
KEGG: cyn:Cyan7425_4914 cyclic nucleotide-binding protein; SPTR: EF hand domain protein.
       0.479
AFM11831.1
PFAM: 2Fe-2S iron-sulfur cluster binding domain; Oxidoreductase FAD-binding domain; Oxidoreductase NAD-binding domain; COGs: COG1018 Flavodoxin reductase (ferredoxin-NADPH reductase) family 1; InterPro IPR008333:IPR001433:IPR001041; KEGG: cyh:Cyan8802_4292 FHA domain containing protein; PFAM: Oxidoreductase FAD-binding region; Oxidoreductase FAD/NAD(P)-binding; Ferredoxin; SPTR: FHA domain containing protein.
       0.479
AFM14580.1
PFAM: Predicted permease YjgP/YjgQ family; COGs: COG0795 permease; InterPro IPR005495; KEGG: lbl:LBL_0706 permease; PFAM: Permease YjgP/YjgQ, predicted; SPTR: Permease.
  
     0.450
AFM11070.1
PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; COGs: COG4206 Outer membrane cobalamin receptor protein; InterPro IPR012910:IPR000531; KEGG: lil:LA_3149 TonB-dependent outer membrane hemin receptor; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; SPTR: TonB-dependent outer membrane hemin receptor.
  
     0.442
AFM14483.1
PFAM: Peptidase family M23; COGs: COG0739 Membrane protein related to metalloendopeptidase; InterPro IPR016047; KEGG: lic:LIC13482 hypothetical protein; PFAM: Peptidase M23; SPTR: Metalloendopeptidase.
 
 
 
 0.437
lpxC
UDP-3-O-(3-hydroxymyristoyl) N-acetylglucosamine deacetylase; Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis; Belongs to the LpxC family.
  
     0.421
AFM11834.1
PFAM: alpha/beta hydrolase fold; COGs: COG0657 Esterase/lipase; InterPro IPR013094; KEGG: atm:ANT_01270 putative hydrolase; SPTR: Lipolytic enzyme.
       0.402
AFM11092.1
PFAM: Peptidase family M23; COGs: COG4942 Membrane-bound metallopeptidase; InterPro IPR016047; KEGG: nmi:NMO_1173 hypothetical protein; PFAM: Peptidase M23; SPTR: Putative uncharacterized protein.
 
 
 
 0.401
Your Current Organism:
Turneriella parva
NCBI taxonomy Id: 869212
Other names: T. parva DSM 21527, Turneriella parva DSM 21527, Turneriella parva H, Turneriella parva NCTC 11395, Turneriella parva str. DSM 21527, Turneriella parva strain DSM 21527
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.