STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFM11878.1PFAM: Stage II sporulation protein E (SpoIIE); InterPro IPR010822; KEGG: lbf:LBF_1767 hypothetical protein; PFAM: Sporulation stage II, protein E C-terminal; SPTR: Putative uncharacterized protein; manually curated. (306 aa)    
Predicted Functional Partners:
AFM11879.1
KEGG: cyn:Cyan7425_2315 multi-sensor signal transduction histidine kinase; SPTR: Multi-sensor signal transduction histidine kinase.
       0.773
AFM11877.1
Hypothetical protein.
       0.576
AFM11880.1
Hypothetical protein.
       0.511
AFM11876.1
PFAM: Bacterial regulatory proteins, tetR family; InterPro IPR001647; KEGG: ppd:Ppro_2215 TetR family transcriptional regulator; PFAM: Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal; SPTR: Transcriptional regulator, TetR family.
       0.510
AFM13178.1
Flagellar protein FlgJ; PFAM: Rod binding protein; InterPro IPR019301; KEGG: lbf:LBF_1483 cell envelope rod binding protein; PFAM: Flagellar protein FlgJ, N-terminal; SPTR: Peptidoglycan hydrolase FlgJ (Muramidase FlgJ).
   
    0.443
AFM14784.1
De-hypoxanthine futalosine cyclase; PFAM: Radical SAM superfamily; TIGRFAM: radical SAM domain protein, CofH subfamily; menaquinone biosynthesis protein, SCO4550 family; COGs: COG1060 Thiamine biosynthesis protein ThiH; InterPro IPR020050:IPR006638:IPR007197; KEGG: lbl:LBL_1039 thiamine biosynthesis enzyme; PFAM: Radical SAM; SMART: Elongator protein 3/MiaB/NifB; SPTR: Thiamine biosynthesis enzyme; TIGRFAM: FO synthase, subunit 2.
   
    0.443
AFM11881.1
PFAM: Bacterial regulatory proteins, tetR family; InterPro IPR001647; KEGG: lbf:LBF_0286 AcrR family transcriptional regulator; PFAM: Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal; SPTR: Putative transcriptional regulator, TetR family.
       0.434
AFM12098.1
Diguanylate cyclase/phosphodiesterase with GAF sensor; PFAM: EAL domain; GAF domain; GGDEF domain; COGs: COG2200 FOG: EAL domain; InterPro IPR003018:IPR000160:IPR001633; KEGG: bse:Bsel_0666 GAF sensor-containing diguanylate cyclase/phosphodiesterase; PFAM: Diguanylate phosphodiesterase, predicted; GAF; Diguanylate cyclase, predicted; SMART: Diguanylate phosphodiesterase, predicted; GAF; Diguanylate cyclase, predicted; SPTR: Putative diguanylate cyclase/phosphodiesterase (GGDEF & EALdomains) with PAS/PAC sensor.
  
  
 0.431
AFM13448.1
Flagellar motor switch protein FliM; FliM is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation.
  
    0.408
AFM10868.1
Hypothetical protein; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; KEGG: lbl:LBL_0257 anti-sigma regulatory factor; SPTR: Anti-sigma regulatory factor.
  
 
 0.402
Your Current Organism:
Turneriella parva
NCBI taxonomy Id: 869212
Other names: T. parva DSM 21527, Turneriella parva DSM 21527, Turneriella parva H, Turneriella parva NCTC 11395, Turneriella parva str. DSM 21527, Turneriella parva strain DSM 21527
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.