STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFM11907.1Protein of unknown function DUF2191; PFAM: Uncharacterized protein conserved in bacteria (DUF2191); InterPro IPR019239; KEGG: gur:Gura_3864 hypothetical protein; PFAM: Protein of unknown function DUF2191; SPTR: Putative uncharacterized protein. (66 aa)    
Predicted Functional Partners:
AFM11908.1
PilT protein domain protein; PFAM: PIN domain; InterPro IPR002716; KEGG: avn:Avin_46630 PIN-domain protein; PFAM: PilT protein, N-terminal; SPTR: PIN-domain protein.
       0.773
AFM11909.1
Orn/DAP/Arg decarboxylase 2; PFAM: Pyridoxal-dependent decarboxylase, C-terminal sheet domain; Pyridoxal-dependent decarboxylase, pyridoxal binding domain; COGs: COG0019 Diaminopimelate decarboxylase; InterPro IPR000183; KEGG: tye:THEYE_A1762 ornithine decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; SPTR: Ornithine decarboxylase; Belongs to the Orn/Lys/Arg decarboxylase class-II family.
       0.773
rpmB
LSU ribosomal protein L28P; PFAM: Ribosomal L28 family; TIGRFAM: ribosomal protein L28; COGs: COG0227 Ribosomal protein L28; HAMAP: Ribosomal protein L28; InterPro IPR001383; KEGG: lbl:LBL_1427 50S ribosomal protein L28; PFAM: Ribosomal protein L28; SPTR: 50S ribosomal protein L28; TIGRFAM: Ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.
       0.493
AFM11910.1
Hypothetical protein; KEGG: Serine protease, subtilase family.
       0.441
Your Current Organism:
Turneriella parva
NCBI taxonomy Id: 869212
Other names: T. parva DSM 21527, Turneriella parva DSM 21527, Turneriella parva H, Turneriella parva NCTC 11395, Turneriella parva str. DSM 21527, Turneriella parva strain DSM 21527
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.