Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| AFM11996.1 | AFM11997.1 | Turpa_1348 | Turpa_1349 | PFAM: Protein of unknown function, DUF400; KEGG: dol:Dole_1197 hypothetical protein; SPTR: Putative uncharacterized protein. | AAA ATPase; DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function. | 0.668 |
| AFM11997.1 | AFM11996.1 | Turpa_1349 | Turpa_1348 | AAA ATPase; DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function. | PFAM: Protein of unknown function, DUF400; KEGG: dol:Dole_1197 hypothetical protein; SPTR: Putative uncharacterized protein. | 0.668 |
| AFM11997.1 | AFM12476.1 | Turpa_1349 | Turpa_1829 | AAA ATPase; DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function. | PilT protein domain protein; PFAM: TRAM domain; PIN domain; COGs: COG4956 Integral membrane protein (PIN domain superfamily); InterPro IPR006596:IPR002716:IPR002792; KEGG: lbl:LBL_0281 hypothetical protein; PFAM: PilT protein, N-terminal; Deoxyribonuclease/rho motif-related TRAM; SMART: Nucleotide binding protein, PINc; SPTR: Putative uncharacterized protein. | 0.571 |
| AFM11997.1 | AFM13290.1 | Turpa_1349 | Turpa_2650 | AAA ATPase; DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function. | DNA replication and repair protein RecN; May be involved in recombinational repair of damaged DNA. | 0.543 |
| AFM11997.1 | AFM13380.1 | Turpa_1349 | Turpa_2741 | AAA ATPase; DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function. | PFAM: Ribosomal protein L11 methyltransferase (PrmA); TIGRFAM: ribosomal protein L11 methyltransferase; COGs: COG2264 Ribosomal protein L11 methylase; InterPro IPR010456; KEGG: bcy:Bcer98_3038 ribosomal protein L11 methyltransferase; PFAM: Ribosomal L11 methyltransferase; SPTR: Ribosomal protein L11 methyltransferase. | 0.565 |
| AFM11997.1 | AFM13657.1 | Turpa_1349 | Turpa_3018 | AAA ATPase; DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function. | Thiamine-phosphate kinase; PFAM: AIR synthase related protein, N-terminal domain; COGs: COG0611 Thiamine monophosphate kinase; InterPro IPR000728; KEGG: rah:Rahaq_3375 thiamine-monophosphate kinase; PFAM: AIR synthase related protein; SPTR: Thiamine-monophosphate kinase. | 0.786 |
| AFM11997.1 | pheT | Turpa_1349 | Turpa_2272 | AAA ATPase; DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function. | phenylalanyl-tRNA synthetase beta subunit; PFAM: tRNA synthetase B5 domain; B3/4 domain; Ferredoxin-fold anticodon binding domain; Putative tRNA binding domain; TIGRFAM: phenylalanyl-tRNA synthetase, beta subunit, non-spirochete bacterial; COGs: COG0072 Phenylalanyl-tRNA synthetase beta subunit; HAMAP: Phenylalanyl-tRNA synthetase, class IIc, beta subunit, bacterial; InterPro IPR004532:IPR002547:IPR005146:IPR005147:IPR005121; KEGG: lil:LA_4035 phenylalanyl-tRNA synthetase subunit beta; PFAM: B3/B4 tRNA-binding domain; tRNA-binding region; tRNA synthetase, B5; Phenylalanyl-tRNA syntheta [...] | 0.585 |
| AFM11997.1 | polA | Turpa_1349 | Turpa_2657 | AAA ATPase; DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.596 |
| AFM11997.1 | recA | Turpa_1349 | Turpa_1245 | AAA ATPase; DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function. | Protein recA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.856 |
| AFM11997.1 | recX | Turpa_1349 | Turpa_2128 | AAA ATPase; DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function. | Regulatory protein recX; Modulates RecA activity; Belongs to the RecX family. | 0.857 |
| AFM11997.1 | uvrC | Turpa_1349 | Turpa_0696 | AAA ATPase; DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function. | Excinuclease ABC subunit C; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision. | 0.609 |
| AFM12476.1 | AFM11997.1 | Turpa_1829 | Turpa_1349 | PilT protein domain protein; PFAM: TRAM domain; PIN domain; COGs: COG4956 Integral membrane protein (PIN domain superfamily); InterPro IPR006596:IPR002716:IPR002792; KEGG: lbl:LBL_0281 hypothetical protein; PFAM: PilT protein, N-terminal; Deoxyribonuclease/rho motif-related TRAM; SMART: Nucleotide binding protein, PINc; SPTR: Putative uncharacterized protein. | AAA ATPase; DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function. | 0.571 |
| AFM13290.1 | AFM11997.1 | Turpa_2650 | Turpa_1349 | DNA replication and repair protein RecN; May be involved in recombinational repair of damaged DNA. | AAA ATPase; DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function. | 0.543 |
| AFM13290.1 | pheT | Turpa_2650 | Turpa_2272 | DNA replication and repair protein RecN; May be involved in recombinational repair of damaged DNA. | phenylalanyl-tRNA synthetase beta subunit; PFAM: tRNA synthetase B5 domain; B3/4 domain; Ferredoxin-fold anticodon binding domain; Putative tRNA binding domain; TIGRFAM: phenylalanyl-tRNA synthetase, beta subunit, non-spirochete bacterial; COGs: COG0072 Phenylalanyl-tRNA synthetase beta subunit; HAMAP: Phenylalanyl-tRNA synthetase, class IIc, beta subunit, bacterial; InterPro IPR004532:IPR002547:IPR005146:IPR005147:IPR005121; KEGG: lil:LA_4035 phenylalanyl-tRNA synthetase subunit beta; PFAM: B3/B4 tRNA-binding domain; tRNA-binding region; tRNA synthetase, B5; Phenylalanyl-tRNA syntheta [...] | 0.596 |
| AFM13290.1 | polA | Turpa_2650 | Turpa_2657 | DNA replication and repair protein RecN; May be involved in recombinational repair of damaged DNA. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.694 |
| AFM13290.1 | recA | Turpa_2650 | Turpa_1245 | DNA replication and repair protein RecN; May be involved in recombinational repair of damaged DNA. | Protein recA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.813 |
| AFM13290.1 | recX | Turpa_2650 | Turpa_2128 | DNA replication and repair protein RecN; May be involved in recombinational repair of damaged DNA. | Regulatory protein recX; Modulates RecA activity; Belongs to the RecX family. | 0.529 |
| AFM13290.1 | uvrC | Turpa_2650 | Turpa_0696 | DNA replication and repair protein RecN; May be involved in recombinational repair of damaged DNA. | Excinuclease ABC subunit C; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision. | 0.501 |
| AFM13380.1 | AFM11997.1 | Turpa_2741 | Turpa_1349 | PFAM: Ribosomal protein L11 methyltransferase (PrmA); TIGRFAM: ribosomal protein L11 methyltransferase; COGs: COG2264 Ribosomal protein L11 methylase; InterPro IPR010456; KEGG: bcy:Bcer98_3038 ribosomal protein L11 methyltransferase; PFAM: Ribosomal L11 methyltransferase; SPTR: Ribosomal protein L11 methyltransferase. | AAA ATPase; DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function. | 0.565 |
| AFM13380.1 | pheT | Turpa_2741 | Turpa_2272 | PFAM: Ribosomal protein L11 methyltransferase (PrmA); TIGRFAM: ribosomal protein L11 methyltransferase; COGs: COG2264 Ribosomal protein L11 methylase; InterPro IPR010456; KEGG: bcy:Bcer98_3038 ribosomal protein L11 methyltransferase; PFAM: Ribosomal L11 methyltransferase; SPTR: Ribosomal protein L11 methyltransferase. | phenylalanyl-tRNA synthetase beta subunit; PFAM: tRNA synthetase B5 domain; B3/4 domain; Ferredoxin-fold anticodon binding domain; Putative tRNA binding domain; TIGRFAM: phenylalanyl-tRNA synthetase, beta subunit, non-spirochete bacterial; COGs: COG0072 Phenylalanyl-tRNA synthetase beta subunit; HAMAP: Phenylalanyl-tRNA synthetase, class IIc, beta subunit, bacterial; InterPro IPR004532:IPR002547:IPR005146:IPR005147:IPR005121; KEGG: lil:LA_4035 phenylalanyl-tRNA synthetase subunit beta; PFAM: B3/B4 tRNA-binding domain; tRNA-binding region; tRNA synthetase, B5; Phenylalanyl-tRNA syntheta [...] | 0.576 |
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