STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFM12172.1KEGG: chu:CHU_1675 hypothetical protein; SPTR: Putative uncharacterized protein. (127 aa)    
Predicted Functional Partners:
AFM12171.1
PFAM: SNARE associated Golgi protein; COGs: COG0586 membrane-associated protein; InterPro IPR015414; KEGG: lbl:LBL_1561 DedA-related protein; PFAM: SNARE associated Golgi protein; SPTR: SNARE-like domain protein.
       0.551
AFM12173.1
KEGG: avi:Avi_0450 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.548
AFM12174.1
KEGG: vpe:Varpa_3929 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.491
AFM12175.1
PFAM: Major intrinsic protein; TIGRFAM: MIP family channel proteins; COGs: COG0580 Glycerol uptake facilitator and related permease (Major Intrinsic Protein Family); InterPro IPR000425; KEGG: hne:HNE_0461 aquaporin Z; PFAM: Major intrinsic protein; SPTR: Aquaporin Z; Belongs to the MIP/aquaporin (TC 1.A.8) family.
       0.491
Your Current Organism:
Turneriella parva
NCBI taxonomy Id: 869212
Other names: T. parva DSM 21527, Turneriella parva DSM 21527, Turneriella parva H, Turneriella parva NCTC 11395, Turneriella parva str. DSM 21527, Turneriella parva strain DSM 21527
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.