STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFM12198.1PFAM: Metallo-beta-lactamase superfamily; RNA-metabolising metallo-beta-lactamase; Beta-Casp domain; COGs: COG1236 exonuclease of the beta-lactamase fold involved in RNA processing; InterPro IPR011108; KEGG: ajs:Ajs_2691 beta-lactamase domain-containing protein; PFAM: RNA-metabolising metallo-beta-lactamase; SPTR: Beta-lactamase domain protein. (454 aa)    
Predicted Functional Partners:
AFM11953.1
WD40 repeat-containing protein; PFAM: WD domain, G-beta repeat; COGs: COG2319 FOG: WD40 repeat; InterPro IPR001680:IPR019781; KEGG: cni:Calni_0847 WD40 repeat, subgroup; PFAM: WD40 repeat, subgroup; SPTR: WD40 repeat, subgroup.
    
 0.844
AFM13995.1
WD40 repeat-containing protein; PFAM: WD domain, G-beta repeat; InterPro IPR019781:IPR001680; KEGG: ptm:GSPATT00025202001 hypothetical protein; PFAM: WD40 repeat, subgroup; SPTR: Chromosome undetermined scaffold_87, whole genome shotgun sequence.
    
 0.844
AFM10783.1
Phosphoglycerate mutase; PFAM: Metalloenzyme superfamily; InterPro IPR006124; KEGG: lbf:LBF_2306 hypothetical protein; PFAM: Metalloenzyme; SPTR: Putative uncharacterized protein.
   
 0.804
AFM11258.1
RNP-1 like RNA-binding protein; PFAM: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); COGs: COG0724 RNA-binding protein (RRM domain); InterPro IPR000504; KEGG: mpt:Mpe_A3805 RNA-binding region RNP-1; PFAM: RNA recognition motif, RNP-1; SMART: RNA recognition motif, RNP-1; SPTR: RNA-binding region RNP-1.
   
 0.774
AFM13783.1
RNP-1 like RNA-binding protein; PFAM: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); COGs: COG0724 RNA-binding protein (RRM domain); InterPro IPR000504; KEGG: rba:RB10458 RNA-binding protein; PFAM: RNA recognition motif, RNP-1; SMART: RNA recognition motif, RNP-1; SPTR: RNA-binding protein.
   
 0.774
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
  
 0.701
rpoB
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 0.655
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
  
 0.583
AFM12321.1
Metallophosphoesterase; PFAM: Calcineurin-like phosphoesterase; TIGRFAM: TIGR04168 family protein; InterPro IPR004843; KEGG: lbf:LBF_3095 hypothetical protein; PFAM: Metallophosphoesterase; SPTR: Putative uncharacterized protein.
  
 0.567
AFM12199.1
PFAM: Protein of unknown function, DUF583; COGs: COG1664 Integral membrane protein CcmA involved in cell shape determination; InterPro IPR007607; KEGG: lbl:LBL_2326 shape determination protein; PFAM: Protein of unknown function DUF583; SPTR: Predicted protein involved in cell shape determination.
       0.501
Your Current Organism:
Turneriella parva
NCBI taxonomy Id: 869212
Other names: T. parva DSM 21527, Turneriella parva DSM 21527, Turneriella parva H, Turneriella parva NCTC 11395, Turneriella parva str. DSM 21527, Turneriella parva strain DSM 21527
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.