STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFM12199.1PFAM: Protein of unknown function, DUF583; COGs: COG1664 Integral membrane protein CcmA involved in cell shape determination; InterPro IPR007607; KEGG: lbl:LBL_2326 shape determination protein; PFAM: Protein of unknown function DUF583; SPTR: Predicted protein involved in cell shape determination. (152 aa)    
Predicted Functional Partners:
AFM13294.1
Flagellar motor switch protein FliN; FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation. Belongs to the FliN/MopA/SpaO family.
    
 
 0.821
AFM12200.1
4-hydroxythreonine-4-phosphate dehydrogenase; PFAM: Pyridoxal phosphate biosynthetic protein PdxA; COGs: COG1995 Pyridoxal phosphate biosynthesis protein; InterPro IPR005255; KEGG: lbl:LBL_2325 4-hydroxythreonine-4-phosphate dehydrogenase; PFAM: Pyridoxal phosphate (active vitamin B6) biosynthesis PdxA; SPTR: 4-hydroxythreonine-4-phosphate dehydrogenase; manually curated; Belongs to the PdxA family.
       0.758
AFM12797.1
PFAM: Protein of unknown function, DUF583; COGs: COG1664 Integral membrane protein CcmA involved in cell shape determination; InterPro IPR007607; KEGG: scl:sce0448 hypothetical protein; PFAM: Protein of unknown function DUF583; SPTR: Putative uncharacterized protein.
  
     0.726
AFM12201.1
Hypothetical protein.
       0.705
AFM12198.1
PFAM: Metallo-beta-lactamase superfamily; RNA-metabolising metallo-beta-lactamase; Beta-Casp domain; COGs: COG1236 exonuclease of the beta-lactamase fold involved in RNA processing; InterPro IPR011108; KEGG: ajs:Ajs_2691 beta-lactamase domain-containing protein; PFAM: RNA-metabolising metallo-beta-lactamase; SPTR: Beta-lactamase domain protein.
       0.501
AFM13879.1
PFAM: YbbR-like protein; InterPro IPR012505; KEGG: tye:THEYE_A0045 hypothetical protein; PFAM: YbbR-like; SPTR: Putative uncharacterized protein.
 
     0.494
AFM14483.1
PFAM: Peptidase family M23; COGs: COG0739 Membrane protein related to metalloendopeptidase; InterPro IPR016047; KEGG: lic:LIC13482 hypothetical protein; PFAM: Peptidase M23; SPTR: Metalloendopeptidase.
 
     0.493
AFM13178.1
Flagellar protein FlgJ; PFAM: Rod binding protein; InterPro IPR019301; KEGG: lbf:LBF_1483 cell envelope rod binding protein; PFAM: Flagellar protein FlgJ, N-terminal; SPTR: Peptidoglycan hydrolase FlgJ (Muramidase FlgJ).
  
     0.472
Your Current Organism:
Turneriella parva
NCBI taxonomy Id: 869212
Other names: T. parva DSM 21527, Turneriella parva DSM 21527, Turneriella parva H, Turneriella parva NCTC 11395, Turneriella parva str. DSM 21527, Turneriella parva strain DSM 21527
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