STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFM12232.1PFAM: Rhodanese-like domain; TIGRFAM: tRNA 2-selenouridine synthase; COGs: COG2603 ATPase; InterPro IPR001763:IPR017582; KEGG: sli:Slin_4991 tRNA 2-selenouridine synthase; PFAM: Rhodanese-like; SMART: Rhodanese-like; SPTR: tRNA 2-selenouridine synthase; TIGRFAM: tRNA 2-selenouridine synthase. (338 aa)    
Predicted Functional Partners:
selD
Selenophosphate synthase; Synthesizes selenophosphate from selenide and ATP.
   
 0.994
AFM12231.1
PFAM: S1/P1 Nuclease; InterPro IPR003154; KEGG: cao:Celal_2401 S1/p1 nuclease; PFAM: S1/P1 nuclease; SPTR: S1/P1 nuclease.
       0.773
AFM12234.1
PFAM: Cytidine and deoxycytidylate deaminase zinc-binding region; COGs: COG0590 Cytosine/adenosine deaminase; InterPro IPR002125; KEGG: elm:ELI_2742 alpha amylase catalytic region; PFAM: CMP/dCMP deaminase, zinc-binding; SPTR: Alpha amylase catalytic region.
       0.655
AFM12230.1
KEGG: lbf:LBF_0156 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.555
AFM12229.1
KEGG: cpi:Cpin_1567 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.493
Your Current Organism:
Turneriella parva
NCBI taxonomy Id: 869212
Other names: T. parva DSM 21527, Turneriella parva DSM 21527, Turneriella parva H, Turneriella parva NCTC 11395, Turneriella parva str. DSM 21527, Turneriella parva strain DSM 21527
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