STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFM12286.1Hypothetical protein. (114 aa)    
Predicted Functional Partners:
AFM12284.1
Protein of unknown function DUF2237; PFAM: Uncharacterized protein conserved in bacteria (DUF2237); COGs: COG3651 conserved hypothetical protein; InterPro IPR018714; KEGG: rba:RB3906 hypothetical protein; PFAM: Protein of unknown function DUF2237; SPTR: Putative uncharacterized protein.
       0.773
AFM12285.1
KEGG: cpi:Cpin_3584 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.773
AFM12283.1
InterPro IPR001258; KEGG: geo:Geob_3253 NHL repeat containing protein; PFAM: NHL repeat; SPTR: NHL repeat containing protein.
       0.645
AFM12287.1
Protein of unknown function methylase putative; PFAM: S-adenosylmethionine-dependent methyltransferase; COGs: COG1092 SAM-dependent methyltransferase; InterPro IPR016065; KEGG: cpi:Cpin_6906 methyltransferase type 11; PFAM: Protein of unknown function methylase putative; SPTR: Methyltransferase type 11.
       0.561
AFM12282.1
PFAM: Fibronectin type III domain; Putative Ig domain; InterPro IPR003961:IPR008009; KEGG: lil:LB_225 hypothetical protein; PFAM: Fibronectin, type III; Putative Ig; SMART: Fibronectin, type III; SPTR: Lipoprotein.
       0.440
Your Current Organism:
Turneriella parva
NCBI taxonomy Id: 869212
Other names: T. parva DSM 21527, Turneriella parva DSM 21527, Turneriella parva H, Turneriella parva NCTC 11395, Turneriella parva str. DSM 21527, Turneriella parva strain DSM 21527
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.