STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFM12308.1Transcriptional regulator, AraC family; COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR018060:IPR000005; KEGG: cpi:Cpin_6750 AraC family transcriptional regulator; PFAM: Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: Putative transcriptional regulator. (246 aa)    
Predicted Functional Partners:
AFM12309.1
Glyoxalase/bleomycin resistance protein/dioxygenase; COGs: COG3324 protein related to lactoylglutathione lyase; InterPro IPR004360; KEGG: vcj:VCD_000677 glyoxalase family protein; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; SPTR: Putative uncharacterized protein.
 
     0.766
AFM12307.1
Negative transcriptional regulator, PaiB family; PFAM: Putative FMN-binding domain; COGs: COG2808 Transcriptional regulator; InterPro IPR007396; KEGG: bpf:BpOF4_18330 sporulation and degradative enzyme transcriptional repressor; PFAM: Negative transcriptional regulator; SPTR: Transcriptional repressor of sporulation and degradative enzyme production.
       0.546
AFM11569.1
KEGG: lic:LIC10665 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.499
AFM12310.1
PFAM: Protein of unknown function, DUF488.
       0.482
AFM12357.1
Glyoxalase/bleomycin resistance protein/dioxygenase; COGs: COG3324 protein related to lactoylglutathione lyase; InterPro IPR004360; KEGG: afr:AFE_1839 hypothetical protein; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; SPTR: Putative uncharacterized protein.
 
     0.472
AFM11987.1
KEGG: lbf:LBF_3282 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.452
Your Current Organism:
Turneriella parva
NCBI taxonomy Id: 869212
Other names: T. parva DSM 21527, Turneriella parva DSM 21527, Turneriella parva H, Turneriella parva NCTC 11395, Turneriella parva str. DSM 21527, Turneriella parva strain DSM 21527
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