STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFM12397.1Transcriptional regulator, AraC family; PFAM: 7TM diverse intracellular signalling; 7TMR-DISM extracellular 2; COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR018060:IPR011622:IPR011623:IPR000005; KEGG: lbf:LBF_1176 AraC family transcriptional regulator; PFAM: Diverse 7TM receptor, transmembrane region; Diverse 7TM receptor, extracellular region 2; Helix-turn-helix, AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: Transcriptional regulator, AraC family. (546 aa)    
Predicted Functional Partners:
AFM12398.1
Hypothetical protein.
       0.608
AFM12399.1
KEGG: mxa:MXAN_6147 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.608
AFM12441.1
PFAM: Beta-lactamase; COGs: COG1680 Beta-lactamase class C and other penicillin binding protein; InterPro IPR001466; KEGG: lbf:LBF_0508 penicillin binding protein; PFAM: Beta-lactamase-related; SPTR: Putative penicillin-binding protein, transpeptidase; putative signal peptide.
  
     0.584
AFM12396.1
KEGG: sus:Acid_4172 hypothetical protein; SPTR: Putative uncharacterized protein.
   
 
 0.580
Your Current Organism:
Turneriella parva
NCBI taxonomy Id: 869212
Other names: T. parva DSM 21527, Turneriella parva DSM 21527, Turneriella parva H, Turneriella parva NCTC 11395, Turneriella parva str. DSM 21527, Turneriella parva strain DSM 21527
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.