STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFM12455.1Glycosyl transferase family 51; PFAM: Penicillin binding protein transpeptidase domain; Transglycosylase; COGs: COG0744 Membrane carboxypeptidase (penicillin-binding protein); InterPro IPR001264:IPR001460; KEGG: lbf:LBF_0816 penicillin binding protein 1; PFAM: Glycosyl transferase, family 51; Penicillin-binding protein, transpeptidase; SPTR: Penicillin-binding protein 1 (PBP-1a; PBP1a). (769 aa)    
Predicted Functional Partners:
rlpA
Rare lipoprotein A; Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides.
 
 
 
 0.838
AFM12701.1
Penicillin-binding protein 2; PFAM: Penicillin binding protein transpeptidase domain; Penicillin-binding Protein dimerisation domain; TIGRFAM: penicillin-binding protein 2; COGs: COG0768 Cell division protein FtsI/penicillin-binding protein 2; InterPro IPR005311:IPR001460:IPR017790; KEGG: lbl:LBL_1957 cell division protein FtsI/penicillin-binding protein; PFAM: Penicillin-binding protein, transpeptidase; Penicillin-binding protein, dimerisation domain; SPTR: Cell division protein FtsI/penicillin-binding protein; TIGRFAM: Penicillin-binding protein 2.
 
 
 
 0.808
AFM12454.1
Hypothetical protein.
       0.773
AFM14752.1
PFAM: Penicillin binding protein transpeptidase domain; Penicillin-binding Protein dimerisation domain; COGs: COG0768 Cell division protein FtsI/penicillin-binding protein 2; InterPro IPR005311:IPR001460; KEGG: lic:LIC10528 Pbp3; PFAM: Penicillin-binding protein, transpeptidase; Penicillin-binding protein, dimerisation domain; SPTR: Putative penicillin-binding protein 3.
 
 
 
 0.770
mltG
Aminodeoxychorismate lyase; Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation. Belongs to the transglycosylase MltG family.
 
   
 0.758
AFM12601.1
PFAM: Cell cycle protein; COGs: COG0772 Bacterial cell division membrane protein; InterPro IPR001182; KEGG: geo:Geob_0779 cell division protein FtsW; PFAM: Cell cycle protein; SPTR: Cell division protein FtsW; Belongs to the SEDS family.
 
 
 
 0.740
AFM12702.1
PFAM: Cell cycle protein; TIGRFAM: rod shape-determining protein RodA; COGs: COG0772 Bacterial cell division membrane protein; InterPro IPR001182; KEGG: lbf:LBF_2967 rod shape-determining protein; PFAM: Cell cycle protein; SPTR: Rod shape-determining protein; putative membrane protein; Belongs to the SEDS family.
 
 
 
 0.728
AFM11094.1
PFAM: Peptidase family M23; LysM domain; COGs: COG0739 Membrane protein related to metalloendopeptidase; InterPro IPR002482:IPR018392:IPR016047; KEGG: lbf:LBF_1376 metalloendopeptidase; PFAM: Peptidase M23; Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding Lysin subgroup; SPTR: M23 family metalloendopeptidase.
  
   
 0.718
AFM14275.1
PFAM: Peptidase family M23; LysM domain; COGs: COG0739 Membrane protein related to metalloendopeptidase; InterPro IPR018392:IPR016047:IPR002482; KEGG: tai:Taci_1251 peptidase M23; PFAM: Peptidase M23; Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding Lysin subgroup; SPTR: Peptidase M23.
  
   
 0.713
AFM13343.1
PFAM: Peptidase family M23; Bacterial SH3 domain; COGs: COG0739 Membrane protein related to metalloendopeptidase; InterPro IPR013247:IPR016047:IPR003646; KEGG: lbf:LBF_0603 metalloendoprotease; PFAM: Peptidase M23; SH3, type 3; SMART: Bacterial SH3-like region; SPTR: Putative metalloendopeptidase, M23B family; putative signal peptide.
 
   
 0.712
Your Current Organism:
Turneriella parva
NCBI taxonomy Id: 869212
Other names: T. parva DSM 21527, Turneriella parva DSM 21527, Turneriella parva H, Turneriella parva NCTC 11395, Turneriella parva str. DSM 21527, Turneriella parva strain DSM 21527
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