STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFM12555.1Protein of unknown function DUF374; COGs: COG2121 conserved hypothetical protein; InterPro IPR007172; KEGG: aar:Acear_2187 hypothetical protein; PFAM: Protein of unknown function DUF374; SPTR: Putative uncharacterized protein. (248 aa)    
Predicted Functional Partners:
AFM12055.1
PFAM: Domain of unknown function (DUF374); COGs: COG2121 conserved hypothetical protein; InterPro IPR007172; KEGG: lbf:LBF_3097 hypothetical protein; PFAM: Protein of unknown function DUF374; SPTR: Conserved domain protein.
  
     0.775
AFM12553.1
KEGG: sur:STAUR_6734 hypothetical protein; SPTR: Conserved uncharacterized protein.
       0.559
AFM12554.1
KEGG: lbl:LBL_0564 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.547
lpxK
lipid-A-disaccharide kinase; Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1-P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA).
 
     0.546
AFM13172.1
PFAM: Protein of unknown function (DUF1009); COGs: COG3494 conserved hypothetical protein; InterPro IPR010415; KEGG: lic:LIC12578 hypothetical protein; PFAM: Protein of unknown function DUF1009; SPTR: Putative uncharacterized protein.
 
     0.522
AFM12552.1
Hypothetical protein.
       0.486
lpxC
UDP-3-O-(3-hydroxymyristoyl) N-acetylglucosamine deacetylase; Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis; Belongs to the LpxC family.
 
     0.465
AFM10841.1
PFAM: Bacterial lipid A biosynthesis acyltransferase; COGs: COG1560 Lauroyl/myristoyl acyltransferase; InterPro IPR004960; KEGG: lil:LA_4039 lauroyl/myristoyl acyltransferase; PFAM: Bacterial lipid A biosynthesis acyltransferase; SPTR: Lauroyl/myristoyl acyltransferase.
 
     0.421
Your Current Organism:
Turneriella parva
NCBI taxonomy Id: 869212
Other names: T. parva DSM 21527, Turneriella parva DSM 21527, Turneriella parva H, Turneriella parva NCTC 11395, Turneriella parva str. DSM 21527, Turneriella parva strain DSM 21527
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.