STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFM12658.1PFAM: Yqey-like protein; InterPro IPR019004; KEGG: gvi:gll0226 hypothetical protein; SPTR: Gll0226 protein. (141 aa)    
Predicted Functional Partners:
rpsU
PFAM: Ribosomal protein S21; TIGRFAM: ribosomal protein S21; HAMAP: Ribosomal protein S21; InterPro IPR001911; KEGG: lbf:LBF_1512 30S ribosomal protein S21; PFAM: Ribosomal protein S21; SPTR: 30S ribosomal protein S21; TIGRFAM: Ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family.
  
  
 0.901
AFM12657.1
KEGG: rmr:Rmar_0092 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.773
AFM14679.1
Putative transcriptional regulator, Crp/Fnr family; PFAM: Cyclic nucleotide-binding domain; COGs: COG0664 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase; InterPro IPR000595; KEGG: dal:Dalk_4072 cyclic nucleotide-binding protein; PFAM: Cyclic nucleotide-binding; SMART: Cyclic nucleotide-binding; SPTR: Cyclic nucleotide-binding protein.
 
     0.741
AFM12845.1
Dual specificity protein phosphatase; PFAM: Cyclin-dependent kinase inhibitor 3 (CDKN3); Isochorismatase family; Phosphotransferase enzyme family; COGs: COG2453 protein-tyrosine phosphatase; InterPro IPR008425; KEGG: lbf:LBF_0535 hypothetical protein; SPTR: Putative uncharacterized protein.
 
     0.625
rpsO
SSU ribosomal protein S15P; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.
  
    0.557
AFM12659.1
Metal dependent phosphohydrolase; PFAM: GAF domain; COGs: COG2206 HD-GYP domain; InterPro IPR003018:IPR003607; KEGG: lbi:LEPBI_I1194 hypothetical protein; PFAM: GAF; SMART: GAF; Metal-dependent phosphohydrolase, HD region; SPTR: Putative uncharacterized protein.
       0.542
AFM12660.1
KEGG: hau:Haur_2318 AraC family transcriptional regulator; SPTR: Transcriptional regulator, AraC family; manually curated.
       0.529
rpmE
LSU ribosomal protein L31P; Binds the 23S rRNA.
   
    0.475
AFM12832.1
Acetyltransferase; PFAM: PGAP1-like protein; COGs: COG1075 acetyltransferase and hydrolase with the alpha/beta hydrolase fold; KEGG: lbf:LBF_0750 acetyltransferase; SPTR: Putative triacylglycerol lipase; putative signal peptide.
  
     0.474
AFM13306.1
Helicase domain-containing protein; PFAM: Helicase conserved C-terminal domain; SNF2 family N-terminal domain; InterPro IPR006935:IPR001650:IPR014001; KEGG: syp:SYNPCC7002_F0092 helicase domain-containing protein; PFAM: DNA/RNA helicase, C-terminal; Restriction endonuclease, type I, R subunit/Type III, Res subunit; SMART: DNA/RNA helicase, C-terminal; DEAD-like helicase, N-terminal; SPTR: Helicase conserved C-terminal domain protein.
  
    0.445
Your Current Organism:
Turneriella parva
NCBI taxonomy Id: 869212
Other names: T. parva DSM 21527, Turneriella parva DSM 21527, Turneriella parva H, Turneriella parva NCTC 11395, Turneriella parva str. DSM 21527, Turneriella parva strain DSM 21527
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.