STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFM12776.1KEGG: tra:Trad_0789 hypothetical protein; SPTR: Putative uncharacterized protein. (484 aa)    
Predicted Functional Partners:
AFM13143.1
PFAM: TonB-dependent Receptor Plug Domain; InterPro IPR012910; KEGG: lbf:LBF_2912 TonB dependent receptor; PFAM: TonB-dependent receptor, plug; SPTR: TonB dependent receptor.
 
 
 0.820
AFM14454.1
OmpA/MotB domain protein; PFAM: WD40-like Beta Propeller Repeat; OmpA family; COGs: COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)protein; InterPro IPR011659:IPR006665; KEGG: chu:CHU_2715 peptidoglycan-associated lipoprotein; PFAM: Outer membrane protein, OmpA/MotB, C-terminal; WD40-like Beta Propeller; SPTR: Peptidoglycan-associated lipoprotein.
 
 
 
 0.711
AFM10917.1
OmpA/MotB domain protein; PFAM: WD40-like Beta Propeller Repeat; OmpA family; COGs: COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)protein; InterPro IPR011659:IPR006665; KEGG: lil:LA_0056 OmpA family protein; PFAM: Outer membrane protein, OmpA/MotB, C-terminal; WD40-like Beta Propeller; SPTR: OmpA family protein.
   
 
 0.665
AFM12474.1
OmpA/MotB domain protein; PFAM: WD40-like Beta Propeller Repeat; OmpA family; COGs: COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)protein; InterPro IPR011659:IPR006665; KEGG: lil:LA_0056 OmpA family protein; PFAM: Outer membrane protein, OmpA/MotB, C-terminal; WD40-like Beta Propeller; SPTR: OmpA family protein.
   
 
 0.665
AFM12775.1
Hypothetical protein.
       0.631
AFM11042.1
PFAM: Fatty acid desaturase; COGs: COG3239 Fatty acid desaturase; InterPro IPR005804; KEGG: scl:sce4399 alkane 1-monooxygenase; PFAM: Fatty acid desaturase, type 1; SPTR: Alkane 1-monooxygenase.
  
     0.586
AFM10879.1
PFAM: Biopolymer transport protein ExbD/TolR; COGs: COG0848 Biopolymer transport protein; InterPro IPR003400; KEGG: rpf:Rpic12D_4694 biopolymer transport protein ExbD/TolR; PFAM: Biopolymer transport protein ExbD/TolR; SPTR: Biopolymer transport protein ExbD/TolR.
  
 
 0.576
AFM12801.1
PFAM: Biopolymer transport protein ExbD/TolR; COGs: COG0848 Biopolymer transport protein; InterPro IPR003400; KEGG: lbf:LBF_2915 ExbD-like biopolymer transport protein; PFAM: Biopolymer transport protein ExbD/TolR; SPTR: Biopolymer transport ExbD protein; TC 2.C.1.1.1.
  
 
 0.576
AFM13788.1
Cell division and transport-associated protein TolR; PFAM: Biopolymer transport protein ExbD/TolR; COGs: COG0848 Biopolymer transport protein; InterPro IPR003400; KEGG: pna:Pnap_3787 biopolymer transport protein ExbD/TolR; PFAM: Biopolymer transport protein ExbD/TolR; SPTR: Biopolymer transport protein ExbD/TolR; TC 2.C.1.2.1.
  
 
 0.576
AFM14513.1
PFAM: Biopolymer transport protein ExbD/TolR; COGs: COG0848 Biopolymer transport protein; InterPro IPR003400; KEGG: lbl:LBL_1529 ExbD-related biopolymer transport protein; PFAM: Biopolymer transport protein ExbD/TolR; SPTR: ExbD-related biopolymer transport protein.
  
 
 0.576
Your Current Organism:
Turneriella parva
NCBI taxonomy Id: 869212
Other names: T. parva DSM 21527, Turneriella parva DSM 21527, Turneriella parva H, Turneriella parva NCTC 11395, Turneriella parva str. DSM 21527, Turneriella parva strain DSM 21527
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