STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFM12850.1Hypothetical protein; KEGG: bmj:BMULJ_04389 outer membrane autotransporter barrel; SPTR: Outer membrane autotransporter barrel. (850 aa)    
Predicted Functional Partners:
AFM12851.1
Hypothetical protein; KEGG: dma:DMR_23100 putative glycosyltransferase; SPTR: Putative glycosyltransferase.
       0.773
AFM12852.1
GumN family protein; PFAM: TraB family; COGs: COG3735 conserved hypothetical protein; InterPro IPR010891; KEGG: srm:SRM_00151 conserved hypothetical protein containing GumN domain; PFAM: GumN; SPTR: GumN protein.
       0.737
AFM12853.1
AAA ATPase central domain protein; PFAM: IstB-like ATP binding protein; COGs: COG1484 DNA replication protein; InterPro IPR003959:IPR003593; KEGG: lbf:LBF_0260 DNA replication protein; PFAM: ATPase, AAA-type, core; SMART: ATPase, AAA+ type, core; SPTR: DNA replication protein DnaC.
       0.737
AFM12854.1
PFAM: Acyl-CoA dehydrogenase, C-terminal domain; Acyl-CoA dehydrogenase, middle domain; Acyl-CoA dehydrogenase, N-terminal domain; COGs: COG1960 Acyl-CoA dehydrogenase; InterPro IPR006092:IPR006091:IPR006090; KEGG: tye:THEYE_A0567 acyl-CoA dehydrogenase, short-chain specific; PFAM: Acyl-CoA oxidase/dehydrogenase, type 1; Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA oxidase/dehydrogenase, central region; SPTR: Acyl-CoA dehydrogenase, short-chain specific.
       0.610
AFM12849.1
PFAM: Cytidylyltransferase family; COGs: COG0575 CDP-diglyceride synthetase; InterPro IPR000374; KEGG: lic:LIC10855 CDP-diglyceride synthetase; PFAM: Phosphatidate cytidylyltransferase; SPTR: CDP-diglyceride synthetase.
       0.536
AFM12846.1
PFAM: Thymidine kinase; COGs: COG1435 Thymidine kinase; InterPro IPR001267; KEGG: cac:CA_C2887 thymidine kinase; PFAM: Thymidine kinase; SPTR: Thymidine kinase.
       0.504
proB
Glutamate 5-kinase; Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate.
       0.504
dxr
1-deoxy-D-xylulose 5-phosphate reductoisomerase; Catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4- phosphate (MEP); Belongs to the DXR family.
       0.504
Your Current Organism:
Turneriella parva
NCBI taxonomy Id: 869212
Other names: T. parva DSM 21527, Turneriella parva DSM 21527, Turneriella parva H, Turneriella parva NCTC 11395, Turneriella parva str. DSM 21527, Turneriella parva strain DSM 21527
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.