STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFM12979.1Protein of unknown function DUF2157, membrane; PFAM: Predicted membrane protein (DUF2157); COGs: COG4872 membrane protein; InterPro IPR018677; KEGG: svo:SVI_2019 hypothetical protein; PFAM: Protein of unknown function DUF2157, membrane; SPTR: Putative uncharacterized protein. (424 aa)    
Predicted Functional Partners:
AFM12978.1
Hypothetical protein; COGs: COG4929 Uncharacterized membrane-anchored protein; KEGG: svo:SVI_2020 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.792
AFM12977.1
PFAM: Enoyl-CoA hydratase/isomerase family; COGs: COG1024 Enoyl-CoA hydratase/carnithine racemase; InterPro IPR001753; KEGG: lil:LA_2265 enoyl-CoA hydratase; PFAM: Crotonase, core; SPTR: Enoyl-CoA hydratase.
       0.581
AFM12980.1
PFAM: Sulfatase; COGs: COG1368 Phosphoglycerol transferase and related protein alkaline phosphatase superfamily; InterPro IPR000917; KEGG: sulfatase; PFAM: Sulfatase; SPTR: Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily.
       0.547
trpF
PFAM: N-(5'phosphoribosyl)anthranilate (PRA) isomerase; COGs: COG0135 Phosphoribosylanthranilate isomerase; InterPro IPR001240; KEGG: gur:Gura_1736 N-(5'-phosphoribosyl)anthranilate isomerase; PFAM: N-(5'phosphoribosyl)anthranilate isomerase (PRAI); SPTR: N-(5'-phosphoribosyl)anthranilate isomerase; Belongs to the TrpF family.
       0.411
AFM12976.1
ABC-type transporter, periplasmic subunit; PFAM: Bacterial extracellular solute-binding proteins, family 5 Middle; COGs: COG0747 ABC-type dipeptide transport system periplasmic component; InterPro IPR000914; KEGG: sfu:Sfum_1411 extracellular solute-binding protein; PFAM: Bacterial extracellular solute-binding protein, family 5; SPTR: Extracellular solute-binding protein, family 5.
       0.411
Your Current Organism:
Turneriella parva
NCBI taxonomy Id: 869212
Other names: T. parva DSM 21527, Turneriella parva DSM 21527, Turneriella parva H, Turneriella parva NCTC 11395, Turneriella parva str. DSM 21527, Turneriella parva strain DSM 21527
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