STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFM13467.1KEGG: sta:STHERM_c11920 hypothetical protein; SPTR: Putative uncharacterized protein. (658 aa)    
Predicted Functional Partners:
AFM13466.1
Protein of unknown function DUF179; PFAM: Uncharacterized ACR, COG1678; COGs: COG1678 Putative transcriptional regulator protein; InterPro IPR003774; KEGG: lbl:LBL_2641 transcriptional regulator; PFAM: Protein of unknown function DUF179; SPTR: Transcriptional regulator; Belongs to the UPF0301 (AlgH) family.
       0.773
AFM13468.1
PFAM: Peptidase family S49; TIGRFAM: signal peptide peptidase SppA, 36K type; COGs: COG0616 Periplasmic serine protease (ClpP class); InterPro IPR002142; KEGG: pbs:Plabr_0403 signal peptide peptidase SppA, 36K type; PFAM: Peptidase S49; SPTR: Signal peptide peptidase SppA, 36K type.
       0.671
AFM13469.1
PFAM: Peptidase family M23; COGs: COG0739 Membrane protein related to metalloendopeptidase; InterPro IPR016047; KEGG: lbl:LBL_0095 metallopeptidase; PFAM: Peptidase M23; SPTR: Metallopeptidase.
       0.474
AFM13470.1
PFAM: Endonuclease related to archaeal Holliday junction resolvase; COGs: COG4741 secreted endonuclease distantly related to Holliday junction resolvase; InterPro IPR019287; KEGG: tde:TDE2613 hypothetical protein; PFAM: Holliday junction resolvase-like; SPTR: Putative uncharacterized protein.
       0.474
Your Current Organism:
Turneriella parva
NCBI taxonomy Id: 869212
Other names: T. parva DSM 21527, Turneriella parva DSM 21527, Turneriella parva H, Turneriella parva NCTC 11395, Turneriella parva str. DSM 21527, Turneriella parva strain DSM 21527
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