STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFM13551.11,4-dihydroxy-6-naphthoate synthase; PFAM: Putative periplasminc binding protein (DUF178); COGs: COG2107 periplasmic solute-binding protein; InterPro IPR003794; KEGG: din:Selin_1733 hypothetical protein; SPTR: Putative uncharacterized protein. (266 aa)    
Predicted Functional Partners:
mqnA
Protein of unknown function DUF178; Catalyzes the dehydration of chorismate into 3-[(1- carboxyvinyl)oxy]benzoate, a step in the biosynthesis of menaquinone (MK, vitamin K2).
 
   
 0.851
AFM14784.1
De-hypoxanthine futalosine cyclase; PFAM: Radical SAM superfamily; TIGRFAM: radical SAM domain protein, CofH subfamily; menaquinone biosynthesis protein, SCO4550 family; COGs: COG1060 Thiamine biosynthesis protein ThiH; InterPro IPR020050:IPR006638:IPR007197; KEGG: lbl:LBL_1039 thiamine biosynthesis enzyme; PFAM: Radical SAM; SMART: Elongator protein 3/MiaB/NifB; SPTR: Thiamine biosynthesis enzyme; TIGRFAM: FO synthase, subunit 2.
 
   
 0.850
AFM10916.1
PFAM: UbiA prenyltransferase family; TIGRFAM: putative 4-hydroxybenzoate polyprenyltransferase; COGs: COG0382 4-hydroxybenzoate polyprenyltransferase and related prenyltransferase; InterPro IPR006371:IPR000537; KEGG: tye:THEYE_A1214 4-hydroxybenzoate polyprenyltransferase, putative; PFAM: UbiA prenyltransferase; SPTR: 4-hydroxybenzoate polyprenyltransferase, putative; TIGRFAM: 4-hydroxybenzoate polyprenyltransferase related.
 
   
 0.813
AFM13881.1
Carboxylyase-related protein; PFAM: 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; TIGRFAM: UbiD family decarboxylases; COGs: COG0043 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylase; InterPro IPR002830; KEGG: bcl:ABC4023 3-polyprenyl-4-hydroxybenzoate decarboxylase; PFAM: Carboxylyase-related; SPTR: 3-polyprenyl-4-hydroxybenzoate decarboxylase; Belongs to the UbiD family.
  
   
 0.795
ubiX
3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for 4-hydroxy-3-polyprenylbenzoic acid decarboxylase UbiD. The prenyltransferase is metal-independent and links a dimethylallyl moiety from dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms of FMN; Belongs to the UbiX/PAD1 family.
 
   
 0.783
AFM13552.1
Hypothetical protein.
       0.773
AFM13553.1
Ribulose-5-phosphate 3-epimerase; PFAM: Ribulose-phosphate 3 epimerase family; TIGRFAM: ribulose-phosphate 3-epimerase; COGs: COG0036 Pentose-5-phosphate-3-epimerase; InterPro IPR000056; KEGG: lbf:LBF_1609 pentose-5-phosphate-3-epimerase; PFAM: Ribulose-phosphate 3-epimerase; SPTR: Ribulose-5-phosphate 3-epimerase; TIGRFAM: Ribulose-phosphate 3-epimerase.
       0.773
AFM13554.1
PASTA domain containing protein; InterPro IPR005543; KEGG: lbl:LBL_1662 hypothetical protein; SMART: PASTA; SPTR: Putative uncharacterized protein.
       0.773
AFM12487.1
PFAM: Amidohydrolase family; COGs: COG0402 Cytosine deaminase and related metal-dependent hydrolase; InterPro IPR006680; KEGG: amidohydrolase; PFAM: Amidohydrolase 1; SPTR: Amidohydrolase.
  
     0.771
AFM13549.1
RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR007627:IPR013249:IPR014284; KEGG: tde:TDE2320 RNA polymerase sigma-24 factor, putative; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2; SPTR: RNA polymerase sigma-H factor family protein; TIGRFAM: RNA polymerase sigma-70; Belongs to the sigma-70 factor family. ECF subfamily.
       0.563
Your Current Organism:
Turneriella parva
NCBI taxonomy Id: 869212
Other names: T. parva DSM 21527, Turneriella parva DSM 21527, Turneriella parva H, Turneriella parva NCTC 11395, Turneriella parva str. DSM 21527, Turneriella parva strain DSM 21527
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