STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFM13553.1Ribulose-5-phosphate 3-epimerase; PFAM: Ribulose-phosphate 3 epimerase family; TIGRFAM: ribulose-phosphate 3-epimerase; COGs: COG0036 Pentose-5-phosphate-3-epimerase; InterPro IPR000056; KEGG: lbf:LBF_1609 pentose-5-phosphate-3-epimerase; PFAM: Ribulose-phosphate 3-epimerase; SPTR: Ribulose-5-phosphate 3-epimerase; TIGRFAM: Ribulose-phosphate 3-epimerase. (217 aa)    
Predicted Functional Partners:
AFM14312.1
PFAM: Transketolase, thiamine diphosphate binding domain; COGs: COG3959 Transketolase N-terminal subunit; InterPro IPR005474; KEGG: lbl:LBL_0493 transketolase, N-terminal subunit; PFAM: Transketolase, N-terminal; SPTR: Transketolase, N-terminal subunit.
 
 0.997
AFM10777.1
PFAM: Ribose/Galactose Isomerase; TIGRFAM: ribose 5-phosphate isomerase B; sugar-phosphate isomerases, RpiB/LacA/LacB family; COGs: COG0698 Ribose 5-phosphate isomerase RpiB; InterPro IPR004785:IPR003500; KEGG: dap:Dacet_1918 sugar-phosphate isomerase, RpiB/LacA/LacB family; PFAM: Ribose/galactose isomerase; SPTR: Sugar-phosphate isomerase, RpiB/LacA/LacB family; TIGRFAM: Ribose/galactose isomerase; Ribose 5-phosphate isomerase B.
 
 
 0.982
AFM14710.1
Transketolase subunit B; PFAM: Transketolase, C-terminal domain; Transketolase, pyrimidine binding domain; COGs: COG3958 Transketolase C-terminal subunit; InterPro IPR005475:IPR005476; KEGG: lic:LIC11355 transketolase; PFAM: Transketolase-like, pyrimidine-binding domain; Transketolase, C-terminal; SPTR: Transketolase C-terminal subunit.
 
 
 0.970
AFM12828.1
PFAM: FGGY family of carbohydrate kinases, N-terminal domain; FGGY family of carbohydrate kinases, C-terminal domain; COGs: COG1070 Sugar (pentulose and hexulose) kinase; InterPro IPR018484:IPR018485; KEGG: mxa:MXAN_2879 putative xylulokinase; PFAM: Carbohydrate kinase, FGGY, C-terminal; Carbohydrate kinase, FGGY, N-terminal; SPTR: Putative xylulokinase.
 
 
 0.947
AFM13064.1
Class II aldolase/adducin family protein; PFAM: Class II Aldolase and Adducin N-terminal domain; COGs: COG0235 Ribulose-5-phosphate 4-epimerase and related epimerase and aldolase; InterPro IPR001303; KEGG: ter:Tery_4650 ribulose-5-phosphate 4-epimerase and related epimerase and aldolases; PFAM: Class II aldolase/adducin, N-terminal; SPTR: Putative uncharacterized protein.
    
 0.926
AFM13554.1
PASTA domain containing protein; InterPro IPR005543; KEGG: lbl:LBL_1662 hypothetical protein; SMART: PASTA; SPTR: Putative uncharacterized protein.
  
  
 0.830
AFM13551.1
1,4-dihydroxy-6-naphthoate synthase; PFAM: Putative periplasminc binding protein (DUF178); COGs: COG2107 periplasmic solute-binding protein; InterPro IPR003794; KEGG: din:Selin_1733 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.773
AFM13552.1
Hypothetical protein.
       0.773
mtnA
Methylthioribose-1-phosphate isomerase; Catalyzes the interconversion of methylthioribose-1-phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1-P).
  
   0.668
AFM14294.1
PFAM: Flagellar protein FliS; TIGRFAM: flagellar biosynthetic protein FliS; COGs: COG1516 Flagellin-specific chaperone FliS; InterPro IPR003713; KEGG: lbf:LBF_1418 endoflagellar biosynthesis chaperone; PFAM: Flagellar protein FliS; SPTR: Flagellar protein FliS (Modular protein); TIGRFAM: Flagellar protein FliS.
    
 
 0.655
Your Current Organism:
Turneriella parva
NCBI taxonomy Id: 869212
Other names: T. parva DSM 21527, Turneriella parva DSM 21527, Turneriella parva H, Turneriella parva NCTC 11395, Turneriella parva str. DSM 21527, Turneriella parva strain DSM 21527
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