STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFM13627.1Hypothetical protein; PFAM: Glycosyl transferases group 1; KEGG: nis:NIS_1404 glycosyl transferase; SPTR: Putative glycosyltransferase. (349 aa)    
Predicted Functional Partners:
AFM13624.1
PFAM: Bacterial capsule synthesis protein PGA_cap; COGs: COG2843 Putative protein of poly-gamma-glutamate biosynthesis (capsule formation); InterPro IPR019079; KEGG: lbl:LBL_0858 poly-gamma-glutamate biosynthesis protein; PFAM: Capsule synthesis protein, CapA; SPTR: Poly-gamma-glutamate biosynthesis protein.
  
    0.777
AFM13625.1
Hypothetical protein.
       0.773
AFM13626.1
Hypothetical protein; KEGG: sur:STAUR_4559 surface antigen variable number repeat protein; SPTR: Surface antigen variable number repeat domain protein.
       0.773
AFM12480.1
PFAM: Bacterial sugar transferase; TIGRFAM: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; Undecaprenyl-phosphate galactose phosphotransferase, WbaP; COGs: COG2148 Sugar transferase involved in lipopolysaccharide synthesis; InterPro IPR003362:IPR017472:IPR017475; KEGG: pmx:PERMA_2008 putative undecaprenyl-phosphate galactosephosphotransferase; PFAM: Bacterial sugar transferase; SPTR: Putative undecaprenyl-phosphate galactosephosphotransferase; TIGRFAM: Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; Undecaprenyl-phosphate galactose phosphotr [...]
  
  
 0.627
AFM12964.1
Hypothetical protein; TIGRFAM: DNA phosphorothioation-associated putative methyltransferase; KEGG: cyh:Cyan8802_1016 hypothetical protein; SPTR: Putative uncharacterized protein.
 
  
 0.552
AFM13628.1
PFAM: Citrate synthase; COGs: COG0372 Citrate synthase; InterPro IPR002020; KEGG: lsp:Bsph_2971 citrate synthase 3; PFAM: Citrate synthase-like; SPTR: Type II citrate synthase; Belongs to the citrate synthase family.
  
  
 0.548
AFM12814.1
dTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family.
  
  
 0.493
AFM10964.1
Nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; UDP-glucose/GDP-mannose dehydrogenase family, central domain; UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; TIGRFAM: nucleotide sugar dehydrogenase; COGs: COG1004 UDP-glucose 6-dehydrogenase; InterPro IPR017476:IPR001732:IPR014026:IPR014027; KEGG: sat:SYN_00532 UDP-glucose 6-dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase, N-terminal; UDP-glucose/GDP-mannose dehydrogenase, dimerisation; UDP-glucose/GDP-mannose dehydrogenase, C-terminal; SPTR: Nucleotide [...]
  
  
 0.481
AFM13629.1
PFAM: Sodium Bile acid symporter family; TIGRFAM: bile acid transporter; COGs: COG0385 Na+-dependent transporter; InterPro IPR002657; KEGG: ote:Oter_4097 bile acid:sodium symporter; PFAM: Bile acid:sodium symporter; SPTR: Bile acid:sodium symporter; manually curated.
       0.432
Your Current Organism:
Turneriella parva
NCBI taxonomy Id: 869212
Other names: T. parva DSM 21527, Turneriella parva DSM 21527, Turneriella parva H, Turneriella parva NCTC 11395, Turneriella parva str. DSM 21527, Turneriella parva strain DSM 21527
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.